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File python-h5py.changes of Package python-h5py (Revision 49de96785613122f5614e025f764dbbe)

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Sun May 29 15:47:49 UTC 2022 - Atri Bhattacharya <badshah400@gmail.com>

- Update to version 3.7.0:
  * Provide the ability to use the Direct Virtual File Driver
    (VFD) from HDF5 (Linux only).
  * The :class:`.File` constructor contains two new parameters
    alignment_threshold, and alignment_interval controling the
    data alignment within the HDF5 file (gh#h5py/h5py#2040).
  * :meth:`~.Group.create_dataset` and
    :meth:`~.Group.require_dataset` now accept parameters
    efile_prefix and virtual_prefix to set a filesystem path
    prefix to use to find files for external datasets and for
    virtual dataset sources (gh#h5py/h5py#2092). These only affect
    the current access; the prefix is not stored in the file.
  * Bugs fixed:
    - Fix a deadlock which was possible when the same dataset was
      accessed from multiple threads (gh#h5py/h5py#2064).
    - New attributes are created directly, instead of via a
      temporary attribute with subsequent renaming. This fixes
      overwriting attributes with track_order=True.
    - Fix for building with mpi4py on Python 3.10
      (gh#h5py/h5py#2101).
    - Fixed fancy indexing with a boolean array for a single
      dimension (gh#h5py/h5py#2079).
    - Avoid returning unitialised memory when reading from a
      chunked dataset with missing chunks and no fill value
      (gh#h5py/h5py#2076).
    - Enable setting of fillvalue for datasets with variable
      length string dtype (gh#h5py/h5py#2044).
    - Closing a file or calling get_obj_ids() no longer re-enables
      Python garbage collection if it was previously disabled
      (gh#h5py/h5py#2020).
- Refresh python-h5py-relax-dependency-versions.patch for updated
  version.

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Fri Mar  4 11:43:46 UTC 2022 - Atri Bhattacharya <badshah400@gmail.com>

- Update to version 3.6.0:
  * Using :meth:`.Dataset.astype` as a context manager (with
    dset.astype(t):) is deprecated. Slice the object returned by
    astype instead (data = dset.astype(t)[:10]).
  * Getting the value of h5py.get_config().default_file_mode now
    issues a deprecation warning. This has been 'r' by default
    from h5py 3.0, and cannot be changed since 3.3.
- Rebase python-h5py-relax-dependency-versions.patch to apply
  against updated version.
- Also enforce %requires_eq on hdf5 to force rebuilds when hdf5
  gets version updates in Factory (boo#1196682).
- Skip tests marked with 'mpi_skip' when building with openmpi
  flavours (see e.g., https://github.com/h5py/h5py/issues/1997).

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Thu Sep  9 16:08:42 UTC 2021 - Matej Cepl <mcepl@suse.com>

- Correct order of definitions to generate multiple packages for
  multiple builds.

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Sun Sep  5 16:38:52 UTC 2021 - Arun Persaud <arun@gmx.de>

- update to version 3.4.0:
  * New features
    + The pre-built wheels now bundle HDF5 1.12.1 (:pr:`1945`).
    + len() now works on dset.astype(), .asstr() and .fields()
      wrappers (:pr:`1913`).
  * Bug fixes
    + Fix bug introduced in version 3.3 that did not allow the
      creation of files using the flag "a" for certain drivers
      (e.g. mpiio, core and stdio) (:pr:`1922`).
    + Dataset indexing will now use the optimized fast path, which was
      accidentally disabled in a previous version (:pr:`1944`).
    + Fix an error building with Cython 3.0 alpha 8 (cpdef inside
      functions) (:pr:`1923`).

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Wed Jun 23 09:37:01 UTC 2021 - andy great <andythe_great@pm.me>

- Update to version 3.3.0.
  * New features
    * Compatibility with the upcoming HDF5 1.12.1 and possibly 1.14.
    * H5T_BITFIELD types will now be cast to their numpy.uint
      equivalent by default (:issue:`1258`). This means that
      no knowledge of mixed type compound dataset schemas is
      required to read these types, and can simply be read as
      follows: arr = dset[:]
      Alternatively, 8-bit bitfields can still be cast to booleans
      explicitly: arr = dset.astype(numpy.bool_)[:]
    * Key types are validated when accessing groups, to give more
      helpful errors when a group is indexed like a dataset.
    * A new :meth:`.Group.build_virtual_dataset` method acting as
      a context manager to assemble virtual datasets.
    * If the source and target of a virtual dataset mapping have
      different numbers of points, an error should now be thrown
      when you make the mapping in the :class:`VirtualLayout`,
      rather than later when writing this into the file. This
      should make it easier to find the source of such errors.
  * Deprecations
    * The default_file_mode config option is deprecated, and setting
      it to values other than 'r' (for read-only mode) is no longer
      allowed. Pass the mode when creating a :class:`.File` object
      instead of setting a global default.
  * Bug fixes
    * Trying to open a file in append mode ('a') should now give
      clearer error messages when the file exists but can't be opened.
    * Protect :func:`h5py.h5f.get_obj_ids` against garbage collection
      invalidating HDF5 IDs while it is retrieving them.
    * Make file closing more robust, including when closing files
      while the interpreter is shutting down, by using lower-level
      code to close HDF5 IDs of objects inside the file.
- Updates for version 3.2.0.
  * New features
    * Added support to use the HDF5 ROS3 driver to access HDF5 files
      on S3.
    * Breaking changes & deprecations
    * Setting the config option default_file_mode to values other
      than 'r' is deprecated. Pass the desired mode when opening a
      :class:`~.File` instead.
  * Exposing HDF5 functions
    * H5Pset_fapl_ros3 & H5Pget_fapl_ros3 (where HDF5 is built with
      read-only S3 support).
  * Bug fixes
    * :exc:`OSError` exceptions raised by h5py should now have a
      useful .errno attribute, where HDF5 provides this information.
      Subclasses such as :exc:`FileNotFoundError` should also be
      raised where appropriate.
    * Fix reading data with a datatype of variable-length arrays of
      fixed length strings.
    * Fix :meth:`.Dataset.read_direct` and :meth:`.Dataset.write_direct`
      when the source and destination have different shapes.
    * Fix selecting data using integer indices in
      :meth:`.Dataset.read_direct` and :meth:`.Dataset.write_direct`.
    * Fix exception handling in :meth:`.Group.visititems`.
    * Issue a warning when File(..., swmr=True) is specified with
      any mode other than 'r', as the SWMR option is ignored in
      these cases.
    * Fix NumPy 1.20 deprecation warnings concerning the use of
      None as shape, and the deprecated aliases np.float, np.int
      and np.bool.
  * 3.2.1 bug fix release
    * Fix :attr:`.File.driver` when the read-only S3 driver is
      available.
- Rebase python-h5py-relax-dependency-versions.patch

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Thu Feb 18 19:40:45 UTC 2021 - Ben Greiner <code@bnavigator.de>

- Skip python36 build. NumPy 1.20 in Tumbleweed dropped support for
  Python 3.6 (NEP 29)
- Fix sitearch handling between regular and mpi builds suitable for
  singlespec with multiple python3 flavors
- Refine requirement versions based on Python version

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Wed Jan 20 13:26:43 UTC 2021 - John Vandenberg <jayvdb@gmail.com>

- Add runtime dependency cached-property based on Python version

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Fri Dec 11 13:48:30 UTC 2020 - Atri Bhattacharya <badshah400@gmail.com>

- Replace %__python3 usage by %python_exec.

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Fri Dec  4 03:15:34 UTC 2020 - Atri Bhattacharya <badshah400@gmail.com>

- Enable parallel hdf5:
  * Implement multibuild for different flavors of openmpi.
  * Export env variables `HDF5_LIBDIR` and `HDF5_INCLUDEDIR`
    pointing to the hdf library and headers location when enabling
    openmpi flavored builds.
  * Add BuildRequires: python-pytest-mpi for mpi tests.
  * Replace python rpm macros with their expansions in most cases
    to adapt to mpi paths.

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Thu Nov 26 14:55:53 UTC 2020 - Atri Bhattacharya <badshah400@gmail.com>

- Update to version 3.1.0:
  * See https://docs.h5py.org/en/latest/whatsnew/3.1.html for list
    of changes.
- Changes from version 3.0.0: See
  https://docs.h5py.org/en/latest/whatsnew/3.0.html
- Drop upstreamed patches:
  * remove_unittest2.patch.
  * no_include_opt.patch.
- Add python-h5py-relax-dependency-versions.patch to allow building
  against more recent versions of numpy than minimally required.
- Python 2 is no longer supported; at least version 3.6 is
  required.
- Run all tests except:
  * MPI based ones, as we build against the non-mpi version of
    hdf5.
  * Offset test which overflows on 32-bit.
- Tests require python-cached-property for openSUSE <= 1500.
- Fix `requires_eq` on libhdf5 (oS:F now has libhdf_hl103)
  already.

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Mon May 11 07:45:48 UTC 2020 - Dirk Mueller <dmueller@suse.com>

- ensure rebuild when hdf5 version changes (bsc#1150049)

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Fri Sep 13 13:12:21 UTC 2019 - Tomáš Chvátal <tchvatal@suse.com>

- Update to 2.10.0:
  * no upstream changelog provided
- Update patch remove_unittest2.patch
- Remove upstream merged fix_failing_x86_test.patch

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Wed Jul 31 19:43:07 UTC 2019 - Todd R <toddrme2178@gmail.com>

- Add fix_failing_x86_test.patch 
  Fixes spurious test failure on x86 platfomrs
  See  gh#h5py/h5py#1163
  From gh#h5py/h5py#1235

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Mon Mar 11 12:38:35 UTC 2019 - Tomáš Chvátal <tchvatal@suse.com>

- Yodate to 2.9.0:
  Changes from 2.8.0 are too numerous to list here, complete changelog         
  is available online at https://github.com/h5py/h5py/releases
- Drop merged patch adjust_mapping_hdf5_error_codes.patch
- Refresh remove_unittest2.patch

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Tue Dec  4 02:51:00 UTC 2018 - Todd R <toddrme2178@gmail.com>

- Use more reliable test invocation

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Fri Oct 12 15:00:53 UTC 2018 - Matej Cepl <mcepl@suse.com>

- Remove valuerror-typerror-failing-tests.patch and replace it with
  proper patch (https://github.com/tacaswell/h5py/commit/6653c65e8c8d0.patch)
  in adjust_mapping_hdf5_error_codes.patch.

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Thu Oct 11 16:34:58 UTC 2018 - Todd R <toddrme2178@gmail.com>

- Fix ldconfig syntax errors.

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Wed Oct 10 14:05:08 UTC 2018 - Matěj Cepl <mcepl@suse.com>

- Add valuerror-typerror-failing-tests.patch to make two tests pass.

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Mon Aug 13 08:55:13 UTC 2018 - mcepl@suse.com

- Updated to 2.8.0
  Changes from 2.7.1 are too numerous to list here, complete changelog
  is available online at https://github.com/h5py/h5py/releases
  Patch dont_reorder_compund.patch has been included upstream
- Remove dependency on unittest2
  Patch remove_unittest2.patch facilitates the change

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Thu Jan 25 22:04:22 UTC 2018 - toddrme2178@gmail.com

- Add dont_reorder_compund.patch
  Fixes builds with numpy 1.14. See:
  https://github.com/h5py/h5py/issues/969
  https://github.com/h5py/h5py/pull/970

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Sun Nov 12 17:01:49 UTC 2017 - arun@gmx.de

- update patch

- update to version 2.7.1:
  * Bug fixes
    + :issue:`903` Fixed critical issue with cyclic gc which resulted
      in segfaults
    + :issue:`904` Avoid unaligned access fixing h5py on sparc64
    + :issue:`883` Fixed compilation issues for some library locations
    + :issue:`868` Fix deadlock between phil and the import lock in
      py2
    + :issue:`841` Improve windows handling if filenames
    + :issue:`874` Allow close to be called on file multiple times
    + :issue:`867`, :issue:`872` Warn on loaded vs complied hdf5
      version issues
    + :issue:`902` Fix overflow computing size of dataset on windows
    + :issue:`912` Do not mangle capitalization of filenames in error
      messages
    + :issue:`842` Fix longdouble on ppc64le
    + :issue:`862`, :issue:`916` Fix compounds structs with
      variable-size members

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Thu May 11 18:04:04 UTC 2017 - toddrme2178@gmail.com

- Implement single-spec version
- Fix source URL
- Update to version 0.2.7
  * Python 3.2 is no longer supported
  * Improved testing support
  * Improved python compatibility
  * Documentation improvements
  * setup.py improvements
  * Support for additional HDF5 features added
  * Improvements to type system
- Update to version 0.2.6
  * Support for HDF5 Virtual Dataset API
  * Add MPI Collective I/O Support
  * Numerous build/testing/CI improvements
  * Cleanup of codebase based on pylint
  * Fixes to low-level API
  * Documentation improvements
- Add no_include_opt.patch to avoid including forbidden
  directories.

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Tue Jul 28 10:34:21 UTC 2015 - toddrme2178@gmail.com

- Fix hdf5 version ambiguity

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Fri Apr 10 14:15:27 UTC 2015 - toddrme2178@gmail.com

- specfile:
  * changed from 2to3 to six
  * added build requirement for python3-pkgconfig
  * added Cython requirement for install
  * update copyright year
- update to version 2.5.0:
  * Experimental SWMR support
  * Group and AttributeManager classes now inherit from the appropriate ABCs
  * Fixed an issue with 64-bit float VLENS
  * Cython warning cleanups related to "const"
  * Entire code base ported to "six"; 2to3 removed from setup.py
- update to version 2.4.0:
  * This release incorporates a total re-write of the identifier
    management system in h5py. As part of this refactoring, the entire
    API is also now protected by threading locks.
  * Files are now automatically closed when all objects within them
    are unreachable. Previously, if File.close() was not explicitly
    closed, files would remain open and "leaks" were possible if the
    File object was lost.
  * The entire API is now believed to be thread-safe (feedback
    welcome!).
  * External links now work if the target file is already
    open. Previously this was not possible because of a mismatch in
    the file close strengths.
  * The options to setup.py have changed; a new top-level "configure"
    command handles options like --hdf5=/path/to/hdf5 and
    --mpi. Setup.py now works correctly under Python 3 when these
    options are used.
  * Cython (0.17+) is now required when building from source.
  * The minimum NumPy version is now 1.6.1.

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Thu Jul 17 09:35:21 UTC 2014 - toddrme2178@gmail.com

- Update download url
- spec file cleanups

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Mon Jul 14 16:20:53 UTC 2014 - toddrme2178@gmail.com

- Update to 2.3.1
  - Bugfix release which fixes a build issue when using the most
    recent version of HDF5 (1.8.13), and some issues with Travis-CI.

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Thu May  8 11:23:35 UTC 2014 - toddrme2178@gmail.com

- Update to version 2.3.0
  - Support for arbitrary vlen data
  - Improved exception messages
  - Improved setuptools support
  - Multiple low-level additions
  - Improved support for MPI features
  - Readonly files can now be opened in default mode
  - Single-step build for HDF5 on Windows

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Mon Dec 16 13:56:43 UTC 2013 - toddrme2178@gmail.com

- Update to version 2.2.1
  + Critical bugfixes

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Tue Dec 10 14:28:44 UTC 2013 - p.drouand@gmail.com

- Update to version 2.2.0
  + This version of h5py introduces support for MPI/Parallel HDF5,
    using the mpi4py package.  Parallel HDF5 is the "native" method
    in HDF5 for sharing files and objects across multiple processes,
    in contrast to the "threading" package or "multiprocessing".
    There is a guide to using Parallel HDF5 at the h5py web site:
    http://www.h5py.org/docs/topics/mpi.html
  + Support for Python 3.3
  + Support for 16-bit "mini" floats
  + Access to the HDF5 scale-offset filter
  + Field names are now allowed when writing to a dataset
  + Region references now preserve the shape of their selections
  + File-resident "committed" types can be linked to datasets and attributes
  + Make object mtime tracking optional
  + A new "move" method on Group objects
  + Many new options for Group.copy
  + Access to HDF5's get_vfd_handle
  + Many bug fixes
- Remove depreciated %{py_requires}
- Remove redundant %clen section
- Remove useless %post/postun sections
- Package ANN.rst, lzf/LICENSE.txt, lzf/README.txt and examples to
  documentation directory

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Wed Apr 24 03:45:08 UTC 2013 - highwaystar.ru@gmail.com

- update to version 2.1.3
  - no changelog

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Sun Nov 25 11:34:42 UTC 2012 - toddrme2178@gmail.com

- Update to 2.1.0
  - No changelog

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Thu Apr 26 02:33:56 UTC 2012 - highwaystar.ru@gmail.com

- python3 package added

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Sun Jan  8 00:47:03 UTC 2012 - toddrme2178@gmail.com

- new version 2.0.1
- cleaned up spec file
- merged changes lists

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Thu Aug  4 02:44:19 UTC 2011 - highwaystar.ru@gmail.com

- version bump to 2.0.0

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Sun May 29 00:00:00 UTC 2011 - werner.ho@gmx.de

- fixed hdf5-devel package name change

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Thu Mar 17 00:00:00 UTC 2011 - werner.ho@gmx.de

- new version 1.3.1

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Sun Sep 19 00:00:00 UTC 2010 - werner.ho@gmx.de

- fixed libhdf5-dependancy

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Mon Jul  5 03:12:54 UTC 2010 - highwaystar.ru@gmail.com

- fixed libhdf5-devel to hdf5-devel

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Mon Mar 22 08:39:48 UTC 2010 - highwaystar.ru@gmail.com

- initial release for openSUSE
- version 1.3.0

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Mon Mar 22 00:00:00 UTC 2010 - tomin@frame10

- initial build for openSUSE

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