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parallel-netcdf
parallel-netcdf.spec
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File parallel-netcdf.spec of Package parallel-netcdf
# # spec file for package parallel-netcdf # # Copyright (c) 2015 SUSE LINUX Products GmbH, Nuernberg, Germany. # # All modifications and additions to the file contributed by third parties # remain the property of their copyright owners, unless otherwise agreed # upon. The license for this file, and modifications and additions to the # file, is the same license as for the pristine package itself (unless the # license for the pristine package is not an Open Source License, in which # case the license is the MIT License). An "Open Source License" is a # license that conforms to the Open Source Definition (Version 1.9) # published by the Open Source Initiative. # Please submit bugfixes or comments via http://bugs.opensuse.org/ # %if 0%{?sles_version} %define _mvapich2 1 %endif %if 0%{?suse_version} %define _openmpi 1 %endif %define _mpi %{?_openmpi:openmpi} %{?_mvapich2:mvapich2} Name: parallel-netcdf %define libname libpnetcdf Version: 1.6.1 Release: 0 %define sonum 1 Summary: High-performance parallel I/O with the NetCDF scientific data format License: NetCDF Group: Productivity/Scientific/Other Url: http://cucis.ece.northwestern.edu/projects/PnetCDF/index.html Source0: http://cucis.ece.northwestern.edu/projects/PnetCDF/Release/%{name}-%{version}.tar.bz2 # PATCH-FIX-OPENSUSE parallel-netcdf-1.6.1-destdir.patch Fix install directories Patch0: parallel-netcdf-1.6.1-destdir.patch BuildRequires: bison BuildRequires: flex BuildRequires: gcc-c++ BuildRequires: gcc-fortran %if 0%{?_openmpi} BuildRequires: openmpi-devel %endif %if 0%{?_mvapich2} BuildRequires: mvapich2-devel %endif BuildRoot: %{_tmppath}/%{name}-%{version}-build %description NetCDF is a set of software libraries and self-describing, machine-independent data formats that support the creation, access, and sharing of array-oriented scientific data. NetCDF (network Common Data Form) is an interface for array-oriented data access and a freely-distributed collection of software libraries for C, Fortran, C++, and perl that provides an implementation of the interface. The NetCDF library also defines a machine-independent format for representing scientific data. Together, the interface, library, and format support the creation, access, and sharing of scientific data. The NetCDF software was developed at the Unidata Program Center in Boulder, Colorado. NetCDF data is: - Self-Describing: A NetCDF file includes information about the data it contains. - Network-transparent: A NetCDF file is represented in a form that can be accessed by computers with different ways of storing integers, characters, and floating-point numbers. - Direct-access: A small subset of a large dataset may be accessed efficiently, without first reading through all the preceding data. - Appendable: Data can be appended to a NetCDF dataset along one dimension without copying the dataset or redefining its structure. The structure of a NetCDF dataset can be changed, though this sometimes causes the dataset to be copied. - Sharable: One writer and multiple readers may simultaneously access the same NetCDF file. Parallel netCDF (PnetCDF) is a library providing high-performance I/O while still maintaining file-format compatibility with Unidata's NetCDF. %package openmpi Summary: High-performance parallel I/O with the NetCDF scientific data format Group: Productivity/Scientific/Other Requires: %{libname}%{sonum}-openmpi = %{version} %description openmpi NetCDF is a set of software libraries and self-describing, machine-independent data formats that support the creation, access, and sharing of array-oriented scientific data. NetCDF (network Common Data Form) is an interface for array-oriented data access and a freely-distributed collection of software libraries for C, Fortran, C++, and perl that provides an implementation of the interface. The NetCDF library also defines a machine-independent format for representing scientific data. Together, the interface, library, and format support the creation, access, and sharing of scientific data. The NetCDF software was developed at the Unidata Program Center in Boulder, Colorado. NetCDF data is: - Self-Describing: A NetCDF file includes information about the data it contains. - Network-transparent: A NetCDF file is represented in a form that can be accessed by computers with different ways of storing integers, characters, and floating-point numbers. - Direct-access: A small subset of a large dataset may be accessed efficiently, without first reading through all the preceding data. - Appendable: Data can be appended to a NetCDF dataset along one dimension without copying the dataset or redefining its structure. The structure of a NetCDF dataset can be changed, though this sometimes causes the dataset to be copied. - Sharable: One writer and multiple readers may simultaneously access the same NetCDF file. Parallel netCDF (PnetCDF) is a library providing high-performance I/O while still maintaining file-format compatibility with Unidata's NetCDF. This package contains the openmpi version of utility functions for working with NetCDF files. %package mvapich2 Summary: High-performance parallel I/O with the NetCDF scientific data format Group: Productivity/Scientific/Other Requires: %{libname}%{sonum}-mvapich2 = %{version} %description mvapich2 NetCDF is a set of software libraries and self-describing, machine-independent data formats that support the creation, access, and sharing of array-oriented scientific data. NetCDF (network Common Data Form) is an interface for array-oriented data access and a freely-distributed collection of software libraries for C, Fortran, C++, and perl that provides an implementation of the interface. The NetCDF library also defines a machine-independent format for representing scientific data. Together, the interface, library, and format support the creation, access, and sharing of scientific data. The NetCDF software was developed at the Unidata Program Center in Boulder, Colorado. NetCDF data is: - Self-Describing: A NetCDF file includes information about the data it contains. - Network-transparent: A NetCDF file is represented in a form that can be accessed by computers with different ways of storing integers, characters, and floating-point numbers. - Direct-access: A small subset of a large dataset may be accessed efficiently, without first reading through all the preceding data. - Appendable: Data can be appended to a NetCDF dataset along one dimension without copying the dataset or redefining its structure. The structure of a NetCDF dataset can be changed, though this sometimes causes the dataset to be copied. - Sharable: One writer and multiple readers may simultaneously access the same NetCDF file. Parallel netCDF (PnetCDF) is a library providing high-performance I/O while still maintaining file-format compatibility with Unidata's NetCDF. This package contains the mvapich2 version of utility functions for working with NetCDF files. %package -n %{libname}%{sonum}-openmpi Summary: High-performance parallel I/O with the NetCDF scientific data format Group: Productivity/Scientific/Other Provides: %{libname}-openmpi = %{version} %description -n %{libname}%{sonum}-openmpi NetCDF is a set of software libraries and self-describing, machine-independent data formats that support the creation, access, and sharing of array-oriented scientific data. NetCDF (network Common Data Form) is an interface for array-oriented data access and a freely-distributed collection of software libraries for C, Fortran, C++, and perl that provides an implementation of the interface. The NetCDF library also defines a machine-independent format for representing scientific data. Together, the interface, library, and format support the creation, access, and sharing of scientific data. The NetCDF software was developed at the Unidata Program Center in Boulder, Colorado. NetCDF data is: - Self-Describing: A NetCDF file includes information about the data it contains. - Network-transparent: A NetCDF file is represented in a form that can be accessed by computers with different ways of storing integers, characters, and floating-point numbers. - Direct-access: A small subset of a large dataset may be accessed efficiently, without first reading through all the preceding data. - Appendable: Data can be appended to a NetCDF dataset along one dimension without copying the dataset or redefining its structure. The structure of a NetCDF dataset can be changed, though this sometimes causes the dataset to be copied. - Sharable: One writer and multiple readers may simultaneously access the same NetCDF file. Parallel netCDF (PnetCDF) is a library providing high-performance I/O while still maintaining file-format compatibility with Unidata's NetCDF. This package contains the openmpi version of the PnetCDF runtime libraries. %package -n %{libname}%{sonum}-mvapich2 Summary: High-performance parallel I/O with the NetCDF scientific data format Group: Productivity/Scientific/Other Provides: %{libname}-mvapich2 = %{version} %description -n %{libname}%{sonum}-mvapich2 NetCDF is a set of software libraries and self-describing, machine-independent data formats that support the creation, access, and sharing of array-oriented scientific data. NetCDF (network Common Data Form) is an interface for array-oriented data access and a freely-distributed collection of software libraries for C, Fortran, C++, and perl that provides an implementation of the interface. The NetCDF library also defines a machine-independent format for representing scientific data. Together, the interface, library, and format support the creation, access, and sharing of scientific data. The NetCDF software was developed at the Unidata Program Center in Boulder, Colorado. NetCDF data is: - Self-Describing: A NetCDF file includes information about the data it contains. - Network-transparent: A NetCDF file is represented in a form that can be accessed by computers with different ways of storing integers, characters, and floating-point numbers. - Direct-access: A small subset of a large dataset may be accessed efficiently, without first reading through all the preceding data. - Appendable: Data can be appended to a NetCDF dataset along one dimension without copying the dataset or redefining its structure. The structure of a NetCDF dataset can be changed, though this sometimes causes the dataset to be copied. - Sharable: One writer and multiple readers may simultaneously access the same NetCDF file. Parallel netCDF (PnetCDF) is a library providing high-performance I/O while still maintaining file-format compatibility with Unidata's NetCDF. This package contains the mvapich2 version of the PnetCDF runtime libraries. %package devel-data Summary: Development data files for %{name} Group: Development/Libraries/Parallel %description devel-data NetCDF is a set of software libraries and self-describing, machine-independent data formats that support the creation, access, and sharing of array-oriented scientific data. NetCDF (network Common Data Form) is an interface for array-oriented data access and a freely-distributed collection of software libraries for C, Fortran, C++, and perl that provides an implementation of the interface. The NetCDF library also defines a machine-independent format for representing scientific data. Together, the interface, library, and format support the creation, access, and sharing of scientific data. The NetCDF software was developed at the Unidata Program Center in Boulder, Colorado. NetCDF data is: - Self-Describing: A NetCDF file includes information about the data it contains. - Network-transparent: A NetCDF file is represented in a form that can be accessed by computers with different ways of storing integers, characters, and floating-point numbers. - Direct-access: A small subset of a large dataset may be accessed efficiently, without first reading through all the preceding data. - Appendable: Data can be appended to a NetCDF dataset along one dimension without copying the dataset or redefining its structure. The structure of a NetCDF dataset can be changed, though this sometimes causes the dataset to be copied. - Sharable: One writer and multiple readers may simultaneously access the same NetCDF file. Parallel netCDF (PnetCDF) is a library providing high-performance I/O while still maintaining file-format compatibility with Unidata's NetCDF. This package contains generic files needed to create projects that use any version of PnetCDF. %package openmpi-devel Summary: Development files for %{name}-openmpi Group: Development/Libraries/Parallel Requires: openmpi-devel Requires: %{libname}%{sonum}-openmpi = %{version} %description openmpi-devel NetCDF is a set of software libraries and self-describing, machine-independent data formats that support the creation, access, and sharing of array-oriented scientific data. NetCDF (network Common Data Form) is an interface for array-oriented data access and a freely-distributed collection of software libraries for C, Fortran, C++, and perl that provides an implementation of the interface. The NetCDF library also defines a machine-independent format for representing scientific data. Together, the interface, library, and format support the creation, access, and sharing of scientific data. The NetCDF software was developed at the Unidata Program Center in Boulder, Colorado. NetCDF data is: - Self-Describing: A NetCDF file includes information about the data it contains. - Network-transparent: A NetCDF file is represented in a form that can be accessed by computers with different ways of storing integers, characters, and floating-point numbers. - Direct-access: A small subset of a large dataset may be accessed efficiently, without first reading through all the preceding data. - Appendable: Data can be appended to a NetCDF dataset along one dimension without copying the dataset or redefining its structure. The structure of a NetCDF dataset can be changed, though this sometimes causes the dataset to be copied. - Sharable: One writer and multiple readers may simultaneously access the same NetCDF file. Parallel netCDF (PnetCDF) is a library providing high-performance I/O while still maintaining file-format compatibility with Unidata's NetCDF. This package contains all files needed to create projects that use the openmpi version of PnetCDF. %package mvapich2-devel Summary: Development files for %{name}-mvapich2 Group: Development/Libraries/Parallel Requires: mvapich2-devel Requires: %{libname}%{sonum}-mvapich2 = %{version} %description mvapich2-devel NetCDF is a set of software libraries and self-describing, machine-independent data formats that support the creation, access, and sharing of array-oriented scientific data. NetCDF (network Common Data Form) is an interface for array-oriented data access and a freely-distributed collection of software libraries for C, Fortran, C++, and perl that provides an implementation of the interface. The NetCDF library also defines a machine-independent format for representing scientific data. Together, the interface, library, and format support the creation, access, and sharing of scientific data. The NetCDF software was developed at the Unidata Program Center in Boulder, Colorado. NetCDF data is: - Self-Describing: A NetCDF file includes information about the data it contains. - Network-transparent: A NetCDF file is represented in a form that can be accessed by computers with different ways of storing integers, characters, and floating-point numbers. - Direct-access: A small subset of a large dataset may be accessed efficiently, without first reading through all the preceding data. - Appendable: Data can be appended to a NetCDF dataset along one dimension without copying the dataset or redefining its structure. The structure of a NetCDF dataset can be changed, though this sometimes causes the dataset to be copied. - Sharable: One writer and multiple readers may simultaneously access the same NetCDF file. Parallel netCDF (PnetCDF) is a library providing high-performance I/O while still maintaining file-format compatibility with Unidata's NetCDF. This package contains all files needed to create projects that use the mvapich2 version of PnetCDF. %package openmpi-devel-static Summary: Static development files for %{name}-openmpi Group: Development/Libraries/Parallel Requires: %{name}-openmpi-devel = %{version} %description openmpi-devel-static NetCDF is a set of software libraries and self-describing, machine-independent data formats that support the creation, access, and sharing of array-oriented scientific data. NetCDF (network Common Data Form) is an interface for array-oriented data access and a freely-distributed collection of software libraries for C, Fortran, C++, and perl that provides an implementation of the interface. The NetCDF library also defines a machine-independent format for representing scientific data. Together, the interface, library, and format support the creation, access, and sharing of scientific data. The NetCDF software was developed at the Unidata Program Center in Boulder, Colorado. NetCDF data is: - Self-Describing: A NetCDF file includes information about the data it contains. - Network-transparent: A NetCDF file is represented in a form that can be accessed by computers with different ways of storing integers, characters, and floating-point numbers. - Direct-access: A small subset of a large dataset may be accessed efficiently, without first reading through all the preceding data. - Appendable: Data can be appended to a NetCDF dataset along one dimension without copying the dataset or redefining its structure. The structure of a NetCDF dataset can be changed, though this sometimes causes the dataset to be copied. - Sharable: One writer and multiple readers may simultaneously access the same NetCDF file. Parallel netCDF (PnetCDF) is a library providing high-performance I/O while still maintaining file-format compatibility with Unidata's NetCDF. This package contains the openmpi versions of the static libraries for PnetCDF. %package mvapich2-devel-static Summary: Static development files for %{name}-mvapich2 Group: Development/Libraries/Parallel Requires: %{name}-mvapich2-devel = %{version} %description mvapich2-devel-static NetCDF is a set of software libraries and self-describing, machine-independent data formats that support the creation, access, and sharing of array-oriented scientific data. NetCDF (network Common Data Form) is an interface for array-oriented data access and a freely-distributed collection of software libraries for C, Fortran, C++, and perl that provides an implementation of the interface. The NetCDF library also defines a machine-independent format for representing scientific data. Together, the interface, library, and format support the creation, access, and sharing of scientific data. The NetCDF software was developed at the Unidata Program Center in Boulder, Colorado. NetCDF data is: - Self-Describing: A NetCDF file includes information about the data it contains. - Network-transparent: A NetCDF file is represented in a form that can be accessed by computers with different ways of storing integers, characters, and floating-point numbers. - Direct-access: A small subset of a large dataset may be accessed efficiently, without first reading through all the preceding data. - Appendable: Data can be appended to a NetCDF dataset along one dimension without copying the dataset or redefining its structure. The structure of a NetCDF dataset can be changed, though this sometimes causes the dataset to be copied. - Sharable: One writer and multiple readers may simultaneously access the same NetCDF file. Parallel netCDF (PnetCDF) is a library providing high-performance I/O while still maintaining file-format compatibility with Unidata's NetCDF. This package contains the mvapich2 versions of the static libraries for PnetCDF. %prep %setup -q -n %{name}-%{version} %patch0 -p1 set -- * for mpi in %_mpi; do mkdir $mpi mkdir $mpi/shared cp -ap "$@" $mpi done %build for mpi in %_mpi; do pushd $mpi %configure --prefix=%{_libdir}/mpi/gcc/$mpi \ --libdir=%{_libdir}/mpi/gcc/$mpi/%{_lib} \ --with-mpi=%{_libdir}/mpi/gcc/$mpi make pushd shared %{_libdir}/mpi/gcc/$mpi/bin/mpif77 -shared -Wl,-soname=libpnetcdf.so.%{sonum} -o ../libpnetcdf.so.%{version} popd popd done %install for mpi in %_mpi; do pushd $mpi %make_install %if %{_lib} != lib mv %{buildroot}%{_libdir}/mpi/gcc/$mpi/lib %{buildroot}%{_libdir}/mpi/gcc/$mpi/%{_lib} %endif install -m 755 libpnetcdf.so.%{version} %{buildroot}%{_libdir}/mpi/gcc/$mpi/%{_lib} pushd %{buildroot}%{_libdir}/mpi/gcc/$mpi/%_lib ln -s libpnetcdf.so.%{version} libpnetcdf.so.%{sonum} ln -s libpnetcdf.so.%{version} libpnetcdf.so popd find %{buildroot} -name '*.la' -exec rm {} \; popd done # rpm macro for version checking mkdir -p %{buildroot}%{_sysconfdir}/rpm cat > %{buildroot}%{_sysconfdir}/rpm/macros.pnetcdf <<EOF # # RPM macros for hdf5 packaging # %_pnetcdf_sonum %{sonum} %_pnetcdf_version %{version} EOF %if 0%{?_openmpi} %post -n libpnetcdf1-openmpi -p /sbin/ldconfig %postun -n libpnetcdf1-openmpi -p /sbin/ldconfig %endif %if 0%{?_mvapich2} %post -n libpnetcdf1-mvapich2 -p /sbin/ldconfig %postun -n libpnetcdf1-mvapich2 -p /sbin/ldconfig %endif %files devel-data %defattr(-,root,root) %{_sysconfdir}/rpm/macros.pnetcdf %if 0%{?_openmpi} %files openmpi %defattr(-,root,root) %{_libdir}/mpi/gcc/openmpi/bin/* %dir %{_libdir}/mpi/gcc/openmpi/man/ %{_libdir}/mpi/gcc/openmpi/man/* %files -n %{libname}%{sonum}-openmpi %defattr(-,root,root) %doc COPYRIGHT CREDITS RELEASE_NOTES %doc README README.LINUX README.large_files %{_libdir}/mpi/gcc/openmpi/%{_lib}/*.so.* %files openmpi-devel %defattr(-,root,root) %{_libdir}/mpi/gcc/openmpi/include/* %{_libdir}/mpi/gcc/openmpi/%{_lib}/*.so %files openmpi-devel-static %defattr(-,root,root) %{_libdir}/mpi/gcc/openmpi/%{_lib}/*.a %endif %if 0%{?_mvapich2} %files mvapich2 %defattr(-,root,root) %{_libdir}/mpi/gcc/mvapich2/bin/* %dir %{_libdir}/mpi/gcc/mvapich2/man/ %{_libdir}/mpi/gcc/mvapich2/man/* %files -n %{libname}%{sonum}-mvapich2 %defattr(-,root,root,-) %doc COPYRIGHT CREDITS RELEASE_NOTES %doc README README.LINUX README.large_files %{_libdir}/mpi/gcc/mvapich2/%{_lib}/*.so.* %files mvapich2-devel %defattr(-,root,root,-) %{_libdir}/mpi/gcc/mvapich2/include/* %{_libdir}/mpi/gcc/mvapich2/%{_lib}/*.so %files mvapich2-devel-static %defattr(-,root,root,-) %{_libdir}/mpi/gcc/mvapich2/%{_lib}/*.a %endif %changelog
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