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spack.27797
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File spack.spec of Package spack.27797
# # spec file for package spack # # Copyright (c) 2023 SUSE LLC # # All modifications and additions to the file contributed by third parties # remain the property of their copyright owners, unless otherwise agreed # upon. The license for this file, and modifications and additions to the # file, is the same license as for the pristine package itself (unless the # license for the pristine package is not an Open Source License, in which # case the license is the MIT License). An "Open Source License" is a # license that conforms to the Open Source Definition (Version 1.9) # published by the Open Source Initiative. # Please submit bugfixes or comments via https://bugs.opensuse.org/ # %global flavor @BUILD_FLAVOR@%{?nil} %if "%{flavor}" == "doc" %bcond_without doc %endif %if %{with doc} && (0%{?sle_version} > 0) && (150200 >= 0%{?sle_version}) ExclusiveArch: do_not_build %endif %define spack_dir %_prefix/lib/spack/ %define spack_group spack # These packages are found and can be used by spack, /etc/spack/packages-yaml # needs to be updated when one of these packages is updated or uninstalled. # Distinguish between packages we recommend and packages which %define spack_trigger_recommended_packages autoconf bash bison bzip2 libzip-devel cmake-full ccache cpio diffutils findutils flex git-lfs make m4 ncurses-devel libtool openssl-devel perl-base pkgconf pkg-config python3-base tar info xz xz-devel %define spack_trigger_recommended_compilers gcc gcc-c++ gcc-fortran # packages recognized by spack, but not recommended %define spack_trigger_packages ghostscript go fish fzf hugo java-11-openjdk-devel java-14-openjdk-devel java-15-openjdk-devel java-16-openjdk-devel java-1_8_0-openjdk-devel ruby openmpi1-devel openmpi2-devel openmpi3-devel openmpi4-devel openmpi1-gnu-hpc-devel openmpi2-gnu-hpc-devel openmpi3-gnu-hpc-devel openmpi4-gnu-hpc-devel mvapich2-devel mpich-devel %define spack_trigger_compilers gcc7 gcc8 gcc9 gcc10 gcc11 gcc12 gcc7-c++ gcc8-c++ gcc9-c++ gcc10-c++ gcc11-c++ gcc12-c++ gcc7-fortran gcc8-fortran gcc9-fortran gcc10-fortran gcc11-fortran gcc12-fortran # non oss packages %define spack_trigger_external cuda-nvcc Name: spack Version: 0.19.1 Release: 0 Summary: Package manager for HPC systems License: Apache-2.0 AND MIT AND Python-2.0 AND BSD-3-Clause URL: https://spack.io Source0: https://github.com/spack/spack/archive/v%{version}.tar.gz#/spack-%{version}.tar.gz Source1: README.SUSE Source2: spack-rpmlintrc Source3: run-find-external.sh.in Source4: https://en.opensuse.org/index.php?title=Spack&action=raw&ref=157522#/README-oo-wiki # Source5 is from https://docs.python.org/3/objects.inv, but has permanent changes so using a static version Source5: objects.inv Patch2: Adapt-shell-scripts-that-set-up-the-environment-for-different-shells.patch Patch4: added-target-and-os-calls-to-output-of-spack-spec-co.patch Patch5: Make-spack-paths-compliant-to-distro-installation.patch Patch6: Fix-error-during-documentation-build-due-to-recursive-module-inclusion.patch Patch7: Fix-Spinx-configuration-to-avoid-throwing-errors.patch Patch8: Set-modules-default-to-lmod.patch Patch9: Add-support-for-container-building-using-a-SLE-base-container.patch Patch100: Make-sure-spack-environment-is-set-up-in-Dockerfile-template.patch %if %{without doc} BuildRequires: fdupes BuildRequires: lua-lmod BuildRequires: polkit BuildRequires: python3-urllib3 BuildRequires: sudo BuildRequires: sysuser-tools Requires: %{name}-recipes = %{version} Requires: bzip2 Requires: coreutils Requires: curl Requires: gcc-c++ Requires: gcc-fortran Requires: gpg2 Requires: libbz2-devel Requires: lua-lmod Requires: make Requires: patch Requires: polkit Requires: python3-clingo Requires: sudo Requires: tar Requires: xz Recommends: %spack_trigger_recommended_packages %spack_trigger_recommended_compilers %else BuildRequires: git BuildRequires: makeinfo # Hardcode this - there is no python2 version of this around any more. BuildRequires: python3-Sphinx >= 3.4 BuildRequires: python3-sphinxcontrib-programoutput BuildRequires: spack # html BuildRequires: graphviz # info BuildRequires: graphviz-gnome ## pdf # BuildRequires: python3-Sphinx-latex Requires: spack %endif BuildArch: noarch %if 0%{?sle_version} <= 120500 && !0%{?is_opensuse} %define __python3 python3 %endif %description Spack is a configurable Python-based HPC package manager, automating the installation and fine-tuning of simulations and libraries. It operates on a wide variety of HPC platforms and enables users to build many code configurations. Software installed by Spack runs correctly regardless of environment, and file management is streamlined. Spack can install many variants of the same build using different compilers, options, and MPI implementations. This package provides a module file that must be loaded to use spack. %package recipes Summary: Spack built-in package recipes Requires: %{name} = %version %description recipes Spack is a configurable Python-based HPC package manager, automating the installation and fine-tuning of simulations and libraries. It operates on a wide variety of HPC platforms and enables users to build many code configurations. Software installed by Spack runs correctly regardless of environment, and file management is streamlined. Spack can install many variants of the same build using different compilers, options, and MPI implementations. This package contains the built-in package recipes. %package man Summary: Man Page for Spack - Package manager for HPC systems Requires: man %description man Spack is a configurable Python-based HPC package manager, automating the installation and fine-tuning of simulations and libraries. It operates on a wide variety of HPC platforms and enables users to build many code configurations. Software installed by Spack runs correctly regardless of environment, and file management is streamlined. Spack can install many variants of the same build using different compilers, options, and MPI implementations. This package contains the man page. %package info Summary: Info Page for Spack - Package manager for HPC systems Requires: info %description info Spack is a configurable Python-based HPC package manager, automating the installation and fine-tuning of simulations and libraries. It operates on a wide variety of HPC platforms and enables users to build many code configurations. Software installed by Spack runs correctly regardless of environment, and file management is streamlined. Spack can install many variants of the same build using different compilers, options, and MPI implementations. This package contains the info page. %prep %setup -q %autopatch -p1 %if %{without doc} # set SPACK_ROOT for i in share/spack/setup-env.*; do sed -i -e "s;@@_prefix@@;%_prefix;g" $i done %else cp %{S:5} lib/spack/docs/ %endif %build # Nothing to build %if %{with doc} mkdir -p ${HOME}/.spack cat > ${HOME}/.spack/config.yaml <<EOF config: install_tree: root: /tmp/spack projections: all: "${ARCHITECTURE}/${COMPILERNAME}-${COMPILERVER}/${PACKAGE}-${VERSION}-${HASH}" EOF # Don't really run spack when building documentation! tmpdir=$(mktemp -d %{_sourcedir}/tmpd-XXXXXXXXX) echo -e '#! /bin/sh args=${1+"$@"} while [ -n "$1" ]; do case $1 in --*) shift ;; graph|spec) exit 0 ;; *) exec /usr/bin/spack ${args} ;; esac; done exit 0' > $tmpdir/spack chmod 0755 $tmpdir/spack PATH=$tmpdir:${PATH} export PATH mkdir -p /tmp/spack cd lib/spack/docs # fix Makefile of sphinx and ignore warnings due to offline build sed -i 's/\(^SPHINXOPTS\).*/\1 = --keep-going /' Makefile # Causes issues building texinfo as a suitable image cannot be found grep -rl ":target:" | xargs sed -i -e "/:target:/s/^/#/" -e "/figure::/s/^/#/" # Fix path to var - we install this to the 'real' /var grep -rl "\$SPACK_ROOT/var" | xargs sed -i -e "s@\(.*\)\$SPACK_ROOT/var\(/spack.*\)@\1/var/lib\2@g" grep -rl '/var/lib/spack/repos' | grep -v "cmd/list.py" | \ xargs -i@ sed -i 's|/var/lib/spack/repos|/usr/share/spack/repos|g' @ # spack cannot run without knowing at least the compiler, so we inject # a dummy one mkdir -p ${HOME}/.spack/linux/ cat > ${HOME}/.spack/linux/compilers.yaml <<EOF compilers: - compiler: spec: gcc@7.5.0 paths: cc: /usr/bin/gcc cxx: /usr/bin/g++ f77: /usr/bin/gfortran fc: /usr/bin/gfortran flags: {} operating_system: SUSE target: x86_64 modules: [] environment: unset: [] extra_rpaths: [] EOF source /usr/share/spack/setup-env.sh make man info || { cat /tmp/sphinx-err-*.log; exit 1; } #text dirhtml rm -rf $tmpdir gzip _build/texinfo/Spack.info _build/man/spack.1 # with doc %endif cd - grep -rl '#! /usr/bin/env bash' . | xargs -i@ sed -i 's|#! /usr/bin/env bash|#!/usr/bin/bash|g' @ grep -rl '#!/bin/env sh' . | xargs -i@ sed -i 's|#!/bin/env sh|#!/usr/bin/sh|g' @ grep -rl '#!/usr/bin/env bash' . | xargs -i@ sed -i 's|#!/usr/bin/env bash|#!/usr/bin/bash|g' @ grep -rl '/var/spack/repos' | grep -v "cmd/list.py" | \ xargs -i@ sed -i 's|/var/spack/repos|/usr/share/spack/repos|g' @ grep -rl "spack/" . | xargs -i@ sed -i \ -e 's|$spack/opt|/opt|g' \ -e 's|$spack/var|/var/lib|g'\ -e 's|$spack/usr|/usr|g'\ -e 's|$spack/share/spack/lmod|/opt/spack/modules|g'\ -e 's|$spack/share/spack/modules|/opt/spack/modules|g'\ @ %install # combine READMEs cat %{S:4} >> %{S:1} %if %{without doc} cp %{S:1} . # Fix some rpmlint warnings ## Remove files not required to run spack rm -rf lib/spack/spack/test rm -rf share/spack/qa rm -rf share/spack/logo rm -rf var/spack/repos/builtin.mock var/spack/gpg.mock var/spack/mock_configs rm -rf lib/spack/external/ruamel/yaml/.ruamel find . -type f -name .gitignore -delete find . -type f -name .nojekyll -delete find . -type f -name .gitlab-ci.yml -delete # Fix _spack_root link rm -f lib/spack/docs/_spack_root ln -sf ../.. lib/spack/docs/_spack_root # Do not ship AWS specifics rm -f share/spack/setup-tutorial-env.sh # Fix rpmlint warnings ## No need for the standalone scripts rm -f lib/spack/external/macholib/macho_*.py ## Remove non linux stuff rm -f bin/spack.bat bin/spack_cmd.bat bin/spack_pwsh.ps1 ## Fix shebangs #sed -i 's@#!/bin/env sh@#!/bin/bash@' var/spack/repos/builtin/packages/beast-tracer/tracer #sed -i 's@#! /usr/bin/env bash@ #!/bin/bash@' share/spack/docker/entrypoint.bash #sed -i 's@#!/usr/bin/env bash@#!/bin/bash@' share/spack/docker/package-index/split.sh mkdir -p %{buildroot}%{spack_dir} mkdir -p %{buildroot}%{spack_dir}/opt mkdir -p %{buildroot}%{_datarootdir}/spack/lib/spack mkdir -p %{buildroot}%{_datarootdir}/spack/modules mkdir -p %{buildroot}%{_localstatedir}/lib/spack mkdir -p %{buildroot}%{_localstatedir}/lib/spack/junit-report mkdir -p %{buildroot}%{_localstatedir}/cache/spack mkdir -p %{buildroot}%{_sysconfdir}/skel/.spack/ mkdir -p %{buildroot}/%{_bindir} # Link avoids having to fix paths ln -sf %{buildroot}/%{_localstatedir}/cache/spack %{buildroot}%{_localstatedir}/lib/spack/cache # Copy files to corresponding paths cp -r etc %{buildroot}%{_prefix} cp -r lib/spack/{env,external,llnl,spack,spack_installable} %{buildroot}%{spack_dir} cp -r share/spack/* %{buildroot}%{_datarootdir}/spack cp -r var/spack/* %{buildroot}%{_localstatedir}/lib/spack # No repos in /var mv %{buildroot}%{_localstatedir}/lib/spack/repos %{buildroot}%{_datarootdir}/spack cp -r bin/sbang %{buildroot}/%{_bindir} cp -r bin/spack* %{buildroot}%{_bindir}/ cp etc/spack/defaults/config.yaml %{buildroot}%{_sysconfdir}/skel/.spack/ install -m 755 %{S:3} %{buildroot}/%{spack_dir}/run-find-external.sh sed -i -e 's#@@_sysconfdir@@#%{_sysconfdir}#' %{buildroot}/%{spack_dir}/run-find-external.sh # Make spack only to write to home dir of user, if run as user sed -i 's@\(\sroot:\) /opt/spack@\1 ~/spack/packages@' %{buildroot}%{_sysconfdir}/skel/.spack/config.yaml sed -i 's@\(\ssource_cache:\).*@\1 /var/tmp/$user/spack-cache@' %{buildroot}%{_sysconfdir}/skel/.spack/config.yaml cat >> %{buildroot}%{_sysconfdir}/skel/.spack/config.yaml <<EOF binary_index_root: ~/.spack/indices EOF cat >> %{buildroot}%{_sysconfdir}/skel/.spack/modules.yaml <<EOF modules: default: roots: tcl: ~/spack/modules lmod: ~/spack/modules EOF # compile python files for python3 # %%{buildroot}%%{spack_dir}/spack %py3_compile . # make shell scripts executeable find %{buildroot}%{_localstatedir}/lib/spack/ -type f -name \*.sh -exec chmod 755 {} \; # Create /etc/spack/compilers.yaml mkdir -p %{buildroot}%{spack_dir}/etc/spack/ cat > %{buildroot}%{spack_dir}/etc/spack/compilers.yaml <<EOF compilers: - compiler: spec: gcc@GCC_FULL_VERSION paths: cc: /usr/bin/gcc-GCC_VERSION cxx: /usr/bin/g++-GCC_VERSION f77: /usr/bin/gfortran-GCC_VERSION fc: /usr/bin/gfortran-GCC_VERSION flags: {} operating_system: SUSE_VERSION target: HOSTTYPE modules: [] environment: unset: [] extra_rpaths: [] EOF # Create /etc/profile.d/spack.sh # This file properly sets MODULEPATH so lua-lmod can find the modules created by spack mkdir -p %{buildroot}/%{_sysconfdir}/profile.d cat > %{buildroot}/%{_sysconfdir}/profile.d/spack.sh <<EOF source /etc/os-release if [ "\${ID}" = "opensuse-tumbleweed" ] ; then SPACK_NAME="\${ID/-/}" else SPACK_NAME="\${ID/-/_}\${VERSION_ID/.*/}" fi export SPACK_ROOT=%{spack_dir} export MODULEPATH=~/spack/modules/linux-\${SPACK_NAME}-\${CPU}:%{_prefix}/share/spack/modules/linux-\${SPACK_NAME}-\${CPU}:\${MODULEPATH} # copy local configuration, if its not there if [ ! -e ~/.spack/config.yaml ] ; then # test if user is in spack group by touching database if ! touch %{spack_dir}/.spack-db &> /dev/null ; then test -e ~/.spack || mkdir -p ~/.spack [ -e ~/.spack/config.yaml ] || \ cp -r %{_sysconfdir}/skel/.spack/config.yaml ~/.spack/ [ -e ~/.spack/modules.yaml ] || \ cp -r %{_sysconfdir}/skel/.spack/modules.yaml ~/.spack/ fi fi EOF # Same for csh cat > %{buildroot}/%{_sysconfdir}/profile.d/spack.csh <<EOF # get ID eval \`awk '/^ID=/ {sub("-","_"); printf("set %%s",\$0);}' /etc/os-release\` # get VERSION_ID eval \`awk '/^VERSION_ID=/ {sub("\\\\.[0-9]",""); printf("set %%s",\$0);}' /etc/os-release\` if ( \$ID == "opensuse_tumbleweed" ) then eval \`awk '/^ID=/ {sub("-",""); printf("set %%s",\$0);}' /etc/os-release\` set SPACK_NAME=\$ID else set SPACK_NAME="\${ID}\${VERSION_ID}" endif set SPACK_ROOT="%{spack_dir}" set MODULEPATH="~/spack/modules/linux-\${SPACK_NAME}-\${CPU}:%{_prefix}/share/spack/modules/linux-\${SPACK_NAME}-\${CPU}:\${MODULEPATH}" if ( ! -e ~/.spack/config.yaml ) then # test if user is in spack group by touching database touch %{spack_dir}/.spack-db >& /dev/null if ( \$? == 1 ) then test -e ~/.spack || mkdir -p ~/.spack test -e ~/.spack/config.yaml || \ cp -r %{_sysconfdir}/skel/.spack/config.yaml ~/.spack/ test -e ~/.spack/modules.yaml || \ cp -r %{_sysconfdir}/skel/.spack/modules.yaml ~/.spack/ endif endif EOF ## Create modules.yaml file, so that hierarchy module files are created #cat > %{buildroot}%{spack_dir}/etc/spack/modules.yaml <<EOF #modules: # enable: # - lmod # lmod: # core_compilers: # - 'gcc@GCC_FULL_VERSION' # projections: # all: '{compiler.name}-{compiler.version}/{name}/{version}' # ^mpi: '{compiler.name}-{compiler.version}/{^mpi.name}-{^mpi.version}/{name}/{version}' #EOF mkdir -p %{buildroot}%{_sysconfdir}/spack # Fix link to not point into buildroot rm -f %{buildroot}%{_localstatedir}/lib/spack/cache ln -sf %{_localstatedir}/cache/spack %{buildroot}%{_localstatedir}/lib/spack/cache # Remove problematic binaries which are removed upstream with # 0889be20e0d9dcdf4346cdeaa0647285187375f3 rm -r %{buildroot}%{_datarootdir}/spack/repos/builtin/packages/patchelf/test/ echo "g %{name} -" > system-group-%{name}.conf %sysusers_generate_pre system-group-%{name}.conf %{name} system-group-%{name}.conf install -D -m 644 system-group-%{name}.conf %{buildroot}%{_sysusersdir}/system-group-%{name}.conf %fdupes %{buildroot}%{spack_dir} %fdupes %{buildroot}%{_datarootdir}/spack %fdupes %{buildroot}%{_localstatedir}/lib/spack %{?_distconfdir:%fdupes %{buildroot}/%{_distconfdir}/spack} %else mkdir -p %{buildroot}%{_infodir} mkdir -p %{buildroot}%{_mandir}/man1 cd lib/spack/docs/_build cp man/spack.1.gz %{buildroot}%{_mandir}/man1/ cp -r texinfo/Spack.info.gz %{buildroot}%{_infodir} [ -d texinfo/Spack-figures ] && cp -r texinfo/Spack-figures %{buildroot}%{_infodir} %endif %pre -f %{name}.pre %post # Replace /etc/spack/compilers.yaml export GCC_VERSION=`gcc -dumpversion` export GCC_FULL_VERSION=`gcc -dumpfullversion` sed -i "s@GCC_FULL_VERSION@$GCC_FULL_VERSION@" %{spack_dir}/etc/spack/compilers.yaml #sed -i "s@GCC_FULL_VERSION@$GCC_FULL_VERSION@" %{spack_dir}/etc/spack/modules.yaml sed -i "s@GCC_VERSION@$GCC_VERSION@" %{spack_dir}/etc/spack/compilers.yaml if [ -e /etc/os-release ] ; then source /etc/os-release if [ "${ID}" = "opensuse-tumbleweed" ] ; then export SPACK_NAME="${ID/-/}" else export SPACK_NAME="${ID/-/_}${VERSION_ID/.*/}" fi sed -i "s@SUSE_VERSION@$SPACK_NAME@" %{spack_dir}/etc/spack/compilers.yaml sed -i "s@SUSE_VERSION@$SPACK_NAME@g" /etc/profile.d/spack.sh fi sed -i "s@HOSTTYPE@$HOSTTYPE@" %{spack_dir}/etc/spack/compilers.yaml # find installed programms /usr/lib/spack/run-find-external.sh mkdir -p /opt/spack chgrp spack /opt/spack chmod 0775 /opt/spack %triggerin -- %{?spack_trigger_recommended_packages} %{?spack_trigger_packages} %{?spack_trigger_external} /usr/lib/spack/run-find-external.sh packages %triggerin -- %{?spack_trigger_recommended_compilers} %{?spack_trigger_compilers} /usr/lib/spack/run-find-external.sh compilers %triggerpostun -- %{?spack_trigger_recommended_packages} %{?spack_trigger_packages} %{?spack_trigger_external} /usr/lib/spack/run-find-external.sh packages %triggerpostun -- %{?spack_trigger_recommended_compilers} %{?spack_trigger_compilers} /usr/lib/spack/run-find-external.sh compilers %if %{without doc} %files %license COPYRIGHT LICENSE-APACHE LICENSE-MIT %doc CHANGELOG.md NOTICE README.md README.SUSE %dir %{_sysconfdir}/spack/ %{_bindir}/* %if 0%{?suse_version} <= 1500 %dir %{_prefix}/etc %endif %{_prefix}/etc/spack %attr(0775, root, spack) %{_localstatedir}/lib/spack/junit-report %attr(0775, root, spack) %{spack_dir}/opt %attr(0775, root, spack) %{_localstatedir}/cache/spack %attr(0775, root, spack) %{_datarootdir}/spack/modules %{spack_dir} %{_localstatedir}/cache/spack %{_localstatedir}/lib/spack %{_datarootdir}/spack %exclude %{_datarootdir}/spack/repos %config %{_sysconfdir}/profile.d/spack.sh %ghost %config %{_sysconfdir}/spack/packages.yaml %config %{_sysconfdir}/profile.d/spack.csh %dir %{_sysconfdir}/skel/.spack %config %{_sysconfdir}/skel/.spack/config.yaml %config %{_sysconfdir}/skel/.spack/modules.yaml # repos directory is installed in -recipes %{_sysusersdir}/system-group-%{name}.conf %files recipes %license COPYRIGHT LICENSE-APACHE LICENSE-MIT %doc CHANGELOG.md NOTICE README.md %{_datarootdir}/spack/repos %else %post info %install_info --info-dir=%{_infodir} --info-file="%{_infodir}/Spack.info.gz" %preun info %install_info_delete --info-dir=%{_infodir} --info-file="%{_infodir}/Spack.info.gz" %files man %{_mandir}/man1/* %files info %{_infodir}/* %endif %changelog
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