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R-CompMix
R-CompMix.spec
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File R-CompMix.spec of Package R-CompMix
# Automatically generated by CRAN2OBS # # Spec file for package CompMix # This file is auto-generated using information in the package source, # esp. Description and Summary. Improvements in that area should be # discussed with upstream. # # Copyright (c) 2024 SUSE LINUX GmbH, Nuernberg, Germany. # # All modifications and additions to the file contributed by third parties # remain the property of their copyright owners, unless otherwise agreed # upon. The license for this file, and modifications and additions to the # file, is the same license as for the pristine package itself (unless the # license for the pristine package is not an Open Source License, in which # case the license is the MIT License). An "Open Source License" is a # license that conforms to the Open Source Definition (Version 1.9) # published by the Open Source Initiative. # # Please submit bugfixes or comments via http://bugs.opensuse.org/ # %global packname CompMix %global rlibdir %{_libdir}/R/library Name: R-%{packname} Version: 0.1.0 Release: 0 Summary: A Comprehensive Toolkit for Environmental Mixtures Analysis ('CompMix') Group: Development/Libraries/Other License: GPL-3 URL: http://cran.r-project.org/web/packages/%{packname} Source: CompMix_0.1.0.tar.gz Requires: R-base Requires: R-mvtnorm Requires: R-gglasso Requires: R-higlasso Requires: R-hierNet Requires: R-glmnet Requires: R-SuperLearner Requires: R-bkmr Requires: R-qgcomp Requires: R-gWQS Requires: R-pROC Requires: R-randomForest Requires: R-devtools Requires: R-dplyr Requires: R-magrittr Requires: R-fields Requires: R-truncnorm Requires: R-tidyr Requires: R-tmvtnorm Requires: R-tibble Requires: R-usethis Requires: R-cli Requires: R-desc Requires: R-ellipsis Requires: R-fs Requires: R-lifecycle Requires: R-memoise Requires: R-miniUI Requires: R-pkgbuild Requires: R-pkgdown Requires: R-pkgload Requires: R-profvis Requires: R-rcmdcheck Requires: R-remotes Requires: R-rlang Requires: R-roxygen2 Requires: R-rversions Requires: R-sessioninfo Requires: R-testthat Requires: R-urlchecker Requires: R-withr Requires: R-foreach Requires: R-shape Requires: R-Rcpp Requires: R-RcppEigen Requires: R-ggplot2 Requires: R-broom Requires: R-rlist Requires: R-reshape2 Requires: R-plotROC Requires: R-knitr Requires: R-kableExtra Requires: R-future Requires: R-future.apply Requires: R-pscl Requires: R-ggrepel Requires: R-cowplot Requires: R-car Requires: R-bookdown Requires: R-gcdnet Requires: R-purrr Requires: R-RcppArmadillo Requires: R-plyr Requires: R-arm Requires: R-generics Requires: R-gridExtra Requires: R-nnls Requires: R-gam Requires: R-cvAUC Requires: R-lme4 Requires: R-abind Requires: R-coda Requires: R-htmltools Requires: R-rmarkdown Requires: R-jquerylib Requires: R-xfun Requires: R-tinytex Requires: R-yaml Requires: R-backports Requires: R-glue Requires: R-stringr Requires: R-carData Requires: R-pbkrtest Requires: R-quantreg Requires: R-scales Requires: R-gtable Requires: R-ROCR Requires: R-data.table Requires: R-R6 Requires: R-pillar Requires: R-tidyselect Requires: R-vctrs Requires: R-spam Requires: R-viridisLite Requires: R-maps Requires: R-iterators Requires: R-digest Requires: R-globals Requires: R-listenv Requires: R-parallelly Requires: R-isoband Requires: R-xml2 Requires: R-rstudioapi Requires: R-svglite Requires: R-evaluate Requires: R-highr Requires: R-cachem Requires: R-shiny Requires: R-callr Requires: R-processx Requires: R-bslib Requires: R-downlit Requires: R-httr Requires: R-jsonlite Requires: R-ragg Requires: R-whisker Requires: R-crayon Requires: R-rprojroot Requires: R-gridSVG Requires: R-htmlwidgets Requires: R-curl Requires: R-prettyunits Requires: R-xopen Requires: R-XML Requires: R-brew Requires: R-commonmark Requires: R-stringi Requires: R-cpp11 Requires: R-brio Requires: R-praise Requires: R-ps Requires: R-waldo Requires: R-fansi Requires: R-pkgconfig Requires: R-gmm Requires: R-clipr Requires: R-gert Requires: R-gh Requires: R-rappdirs Requires: R-base64enc Requires: R-fastmap Requires: R-mime Requires: R-sass Requires: R-askpass Requires: R-credentials Requires: R-openssl Requires: R-sys Requires: R-zip Requires: R-gitcreds Requires: R-httr2 Requires: R-ini Requires: R-sandwich Requires: R-minqa Requires: R-nloptr Requires: R-numDeriv Requires: R-utf8 Requires: R-SparseM Requires: R-MatrixModels Requires: R-systemfonts Requires: R-textshaping Requires: R-fontawesome Requires: R-gplots Requires: R-farver Requires: R-labeling Requires: R-munsell Requires: R-RColorBrewer Requires: R-httpuv Requires: R-xtable Requires: R-sourcetools Requires: R-later Requires: R-promises Requires: R-dotCall64 Requires: R-diffobj Requires: R-rematch2 Requires: R-gtools Requires: R-caTools Requires: R-colorspace Requires: R-zoo Requires: R-bitops # %%if 0%%{?sle_version} > 120400 || 0%%{?is_opensuse} # # Three others commonly needed # BuildRequires: tex(ae.sty) # BuildRequires: tex(fancyvrb.sty) # BuildRequires: tex(inconsolata.sty) # BuildRequires: tex(natbib.sty) # %else # BuildRequires: texlive # %endif # BuildRequires: texinfo BuildRequires: fdupes BuildRequires: R-base BuildRequires: R-mvtnorm BuildRequires: R-gglasso BuildRequires: R-higlasso BuildRequires: R-hierNet BuildRequires: R-glmnet BuildRequires: R-SuperLearner BuildRequires: R-bkmr BuildRequires: R-qgcomp BuildRequires: R-gWQS BuildRequires: R-pROC BuildRequires: R-randomForest BuildRequires: R-devtools BuildRequires: R-dplyr BuildRequires: R-magrittr BuildRequires: R-fields BuildRequires: R-truncnorm BuildRequires: R-tidyr BuildRequires: R-tmvtnorm BuildRequires: R-tibble BuildRequires: R-usethis BuildRequires: R-cli BuildRequires: R-desc BuildRequires: R-ellipsis BuildRequires: R-fs BuildRequires: R-lifecycle BuildRequires: R-memoise BuildRequires: R-miniUI BuildRequires: R-pkgbuild BuildRequires: R-pkgdown BuildRequires: R-pkgload BuildRequires: R-profvis BuildRequires: R-rcmdcheck BuildRequires: R-remotes BuildRequires: R-rlang BuildRequires: R-roxygen2 BuildRequires: R-rversions BuildRequires: R-sessioninfo BuildRequires: R-testthat BuildRequires: R-urlchecker BuildRequires: R-withr BuildRequires: R-foreach BuildRequires: R-shape BuildRequires: R-Rcpp-devel BuildRequires: R-RcppEigen-devel BuildRequires: R-ggplot2 BuildRequires: R-broom BuildRequires: R-rlist BuildRequires: R-reshape2 BuildRequires: R-plotROC BuildRequires: R-knitr BuildRequires: R-kableExtra BuildRequires: R-future BuildRequires: R-future.apply BuildRequires: R-pscl BuildRequires: R-ggrepel BuildRequires: R-cowplot BuildRequires: R-car BuildRequires: R-bookdown BuildRequires: R-gcdnet BuildRequires: R-purrr BuildRequires: R-RcppArmadillo-devel BuildRequires: R-plyr BuildRequires: R-arm BuildRequires: R-generics BuildRequires: R-gridExtra BuildRequires: R-nnls BuildRequires: R-gam BuildRequires: R-cvAUC BuildRequires: R-lme4 BuildRequires: R-abind BuildRequires: R-coda BuildRequires: R-htmltools BuildRequires: R-rmarkdown BuildRequires: R-jquerylib BuildRequires: R-xfun BuildRequires: R-tinytex BuildRequires: R-yaml BuildRequires: R-backports BuildRequires: R-glue BuildRequires: R-stringr BuildRequires: R-carData BuildRequires: R-pbkrtest BuildRequires: R-quantreg BuildRequires: R-scales BuildRequires: R-gtable BuildRequires: R-ROCR BuildRequires: R-data.table BuildRequires: R-R6 BuildRequires: R-pillar BuildRequires: R-tidyselect BuildRequires: R-vctrs BuildRequires: R-spam BuildRequires: R-viridisLite BuildRequires: R-maps BuildRequires: R-iterators BuildRequires: R-digest BuildRequires: R-globals BuildRequires: R-listenv BuildRequires: R-parallelly BuildRequires: R-isoband BuildRequires: R-xml2 BuildRequires: R-rstudioapi BuildRequires: R-svglite BuildRequires: R-evaluate BuildRequires: R-highr BuildRequires: R-cachem BuildRequires: R-shiny BuildRequires: R-callr BuildRequires: R-processx BuildRequires: R-bslib BuildRequires: R-downlit BuildRequires: R-httr BuildRequires: R-jsonlite BuildRequires: R-ragg BuildRequires: R-whisker BuildRequires: R-crayon BuildRequires: R-rprojroot BuildRequires: R-gridSVG BuildRequires: R-htmlwidgets BuildRequires: R-curl BuildRequires: R-prettyunits BuildRequires: R-xopen BuildRequires: R-XML BuildRequires: R-brew BuildRequires: R-commonmark BuildRequires: R-stringi BuildRequires: R-cpp11-devel BuildRequires: R-brio BuildRequires: R-praise BuildRequires: R-ps BuildRequires: R-waldo BuildRequires: R-fansi BuildRequires: R-pkgconfig BuildRequires: R-gmm BuildRequires: R-clipr BuildRequires: R-gert BuildRequires: R-gh BuildRequires: R-rappdirs BuildRequires: R-base64enc BuildRequires: R-fastmap BuildRequires: R-mime BuildRequires: R-sass BuildRequires: R-askpass BuildRequires: R-credentials BuildRequires: R-openssl BuildRequires: R-sys BuildRequires: R-zip BuildRequires: R-gitcreds BuildRequires: R-httr2 BuildRequires: R-ini BuildRequires: R-sandwich BuildRequires: R-minqa BuildRequires: R-nloptr BuildRequires: R-numDeriv BuildRequires: R-utf8 BuildRequires: R-SparseM BuildRequires: R-MatrixModels BuildRequires: R-systemfonts BuildRequires: R-textshaping BuildRequires: R-fontawesome BuildRequires: R-gplots BuildRequires: R-farver BuildRequires: R-labeling BuildRequires: R-munsell BuildRequires: R-RColorBrewer BuildRequires: R-httpuv BuildRequires: R-xtable BuildRequires: R-sourcetools-devel BuildRequires: R-later BuildRequires: R-promises BuildRequires: R-dotCall64 BuildRequires: R-diffobj BuildRequires: R-rematch2 BuildRequires: R-gtools BuildRequires: R-caTools BuildRequires: R-colorspace BuildRequires: R-zoo BuildRequires: R-bitops %description Quantitative characterization of the health impacts associated with exposure to chemical mixtures has received considerable attention in current environmental and epidemiological studies. 'CompMix' package allows practitioners to estimate the health impacts from exposure to chemical mixtures data through various statistical approaches, including Lasso, Elastic net, Bayeisan kernel machine regression (BKMR), hierNet, Quantile g-computation, Weighted quantile sum (WQS) and Random forest. Hao W, Cathey A, Aung M, Boss J, Meeker J, Mukherjee B. (2024) "Statistical methods for chemical mixtures: a practitioners guide". <DOI:10.1101/2024.03.03.24303677>. %prep %setup -q -c -n %{packname} # the next line is needed, because we build without --clean in between two packages rm -rf ~/.R %build %install mkdir -p %{buildroot}%{rlibdir} %{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname} test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) rm -f %{buildroot}%{rlibdir}/R.css %fdupes -s %{buildroot}%{rlibdir} #%%check #%%{_bindir}/R CMD check %%{packname} %files %dir %{rlibdir}/%{packname} %doc %{rlibdir}/%{packname}/DESCRIPTION %{rlibdir}/%{packname}/INDEX %{rlibdir}/%{packname}/Meta %{rlibdir}/%{packname}/NAMESPACE %{rlibdir}/%{packname}/R %doc %{rlibdir}/%{packname}/help %doc %{rlibdir}/%{packname}/html %{rlibdir}/%{packname}/ %changelog
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