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R-hJAM
R-hJAM.spec
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File R-hJAM.spec of Package R-hJAM
# Automatically generated by CRAN2OBS # # Spec file for package hJAM # This file is auto-generated using information in the package source, # esp. Description and Summary. Improvements in that area should be # discussed with upstream. # # Copyright (c) 2024 SUSE LINUX GmbH, Nuernberg, Germany. # # All modifications and additions to the file contributed by third parties # remain the property of their copyright owners, unless otherwise agreed # upon. The license for this file, and modifications and additions to the # file, is the same license as for the pristine package itself (unless the # license for the pristine package is not an Open Source License, in which # case the license is the MIT License). An "Open Source License" is a # license that conforms to the Open Source Definition (Version 1.9) # published by the Open Source Initiative. # # Please submit bugfixes or comments via http://bugs.opensuse.org/ # %global packname hJAM %global rlibdir %{_libdir}/R/library Name: R-%{packname} Version: 1.0.0 Release: 0 Summary: Hierarchical Joint Analysis of Marginal Summary Statistics Group: Development/Libraries/Other License: MIT + file LICENSE URL: http://cran.r-project.org/web/packages/%{packname} Source: hJAM_1.0.0.tar.gz Requires: R-base Requires: R-ggplot2 Requires: R-ggpubr Requires: R-dplyr Requires: R-reshape2 Requires: R-cli Requires: R-generics Requires: R-glue Requires: R-lifecycle Requires: R-magrittr Requires: R-pillar Requires: R-R6 Requires: R-rlang Requires: R-tibble Requires: R-tidyselect Requires: R-vctrs Requires: R-gtable Requires: R-isoband Requires: R-scales Requires: R-withr Requires: R-ggrepel Requires: R-ggsci Requires: R-tidyr Requires: R-purrr Requires: R-cowplot Requires: R-ggsignif Requires: R-gridExtra Requires: R-polynom Requires: R-rstatix Requires: R-plyr Requires: R-Rcpp Requires: R-stringr Requires: R-fansi Requires: R-utf8 Requires: R-broom Requires: R-corrplot Requires: R-car Requires: R-farver Requires: R-labeling Requires: R-munsell Requires: R-RColorBrewer Requires: R-viridisLite Requires: R-stringi Requires: R-pkgconfig Requires: R-cpp11 Requires: R-backports Requires: R-carData Requires: R-abind Requires: R-pbkrtest Requires: R-quantreg Requires: R-lme4 Requires: R-colorspace Requires: R-minqa Requires: R-nloptr Requires: R-RcppEigen Requires: R-numDeriv Requires: R-doBy Requires: R-SparseM Requires: R-MatrixModels Requires: R-Deriv Requires: R-modelr Requires: R-microbenchmark # %%if 0%%{?sle_version} > 120400 || 0%%{?is_opensuse} # # Three others commonly needed # BuildRequires: tex(ae.sty) # BuildRequires: tex(fancyvrb.sty) # BuildRequires: tex(inconsolata.sty) # BuildRequires: tex(natbib.sty) # %else # BuildRequires: texlive # %endif # BuildRequires: texinfo BuildRequires: fdupes BuildRequires: R-base BuildRequires: R-ggplot2 BuildRequires: R-ggpubr BuildRequires: R-dplyr BuildRequires: R-reshape2 BuildRequires: R-cli BuildRequires: R-generics BuildRequires: R-glue BuildRequires: R-lifecycle BuildRequires: R-magrittr BuildRequires: R-pillar BuildRequires: R-R6 BuildRequires: R-rlang BuildRequires: R-tibble BuildRequires: R-tidyselect BuildRequires: R-vctrs BuildRequires: R-gtable BuildRequires: R-isoband BuildRequires: R-scales BuildRequires: R-withr BuildRequires: R-ggrepel BuildRequires: R-ggsci BuildRequires: R-tidyr BuildRequires: R-purrr BuildRequires: R-cowplot BuildRequires: R-ggsignif BuildRequires: R-gridExtra BuildRequires: R-polynom BuildRequires: R-rstatix BuildRequires: R-plyr BuildRequires: R-Rcpp-devel BuildRequires: R-stringr BuildRequires: R-fansi BuildRequires: R-utf8 BuildRequires: R-broom BuildRequires: R-corrplot BuildRequires: R-car BuildRequires: R-farver BuildRequires: R-labeling BuildRequires: R-munsell BuildRequires: R-RColorBrewer BuildRequires: R-viridisLite BuildRequires: R-stringi BuildRequires: R-pkgconfig BuildRequires: R-cpp11-devel BuildRequires: R-backports BuildRequires: R-carData BuildRequires: R-abind BuildRequires: R-pbkrtest BuildRequires: R-quantreg BuildRequires: R-lme4 BuildRequires: R-colorspace BuildRequires: R-minqa BuildRequires: R-nloptr BuildRequires: R-RcppEigen-devel BuildRequires: R-numDeriv BuildRequires: R-doBy BuildRequires: R-SparseM BuildRequires: R-MatrixModels BuildRequires: R-Deriv BuildRequires: R-modelr BuildRequires: R-microbenchmark Suggests: R-knitr Suggests: R-rmarkdown %description Provides functions to implement a hierarchical approach which is designed to perform joint analysis of summary statistics using the framework of Mendelian Randomization or transcriptome analysis. Reference: Lai Jiang, Shujing Xu, Nicholas Mancuso, Paul J. Newcombe, David V. Conti (2020). "A Hierarchical Approach Using Marginal Summary Statistics for Multiple Intermediates in a Mendelian Randomization or Transcriptome Analysis." <bioRxiv><doi:10.1101/2020.02.03.924241>. %prep %setup -q -c -n %{packname} # the next line is needed, because we build without --clean in between two packages rm -rf ~/.R %build %install mkdir -p %{buildroot}%{rlibdir} %{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname} test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) rm -f %{buildroot}%{rlibdir}/R.css %fdupes -s %{buildroot}%{rlibdir} #%%check #%%{_bindir}/R CMD check %%{packname} %files %dir %{rlibdir}/%{packname} %doc %{rlibdir}/%{packname}/DESCRIPTION %{rlibdir}/%{packname}/INDEX %license %{rlibdir}/%{packname}/LICENSE %{rlibdir}/%{packname}/Meta %{rlibdir}/%{packname}/NAMESPACE %{rlibdir}/%{packname}/R %{rlibdir}/%{packname}/data %{rlibdir}/%{packname}/doc %doc %{rlibdir}/%{packname}/help %doc %{rlibdir}/%{packname}/html %changelog
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