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File R-hJAM.spec of Package R-hJAM (Revision 1dae49d4087ed8fcd53dd421e0f8965f)

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# Automatically generated by CRAN2OBS
# 
# Spec file for package hJAM 
# This file is auto-generated using information in the package source, 
# esp. Description and Summary. Improvements in that area should be 
# discussed with upstream. 
# 
# Copyright (c) 2021 SUSE LINUX GmbH, Nuernberg, Germany. 
# 
# All modifications and additions to the file contributed by third parties 
# remain the property of their copyright owners, unless otherwise agreed 
# upon. The license for this file, and modifications and additions to the 
# file, is the same license as for the pristine package itself (unless the 
# license for the pristine package is not an Open Source License, in which 
# case the license is the MIT License). An "Open Source License" is a 
# license that conforms to the Open Source Definition (Version 1.9) 
# published by the Open Source Initiative. 
#  
# Please submit bugfixes or comments via http://bugs.opensuse.org/ 
# 
 
%global packname  hJAM 
%global rlibdir   %{_libdir}/R/library 
 
Name:           R-%{packname} 
Version:        1.0.0 
Release:        0 
Summary:        Hierarchical Joint Analysis of Marginal Summary Statistics 
Group:          Development/Libraries/Other 
License:        MIT + file LICENSE 
URL:            http://cran.r-project.org/web/packages/%{packname} 
Source:         hJAM_1.0.0.tar.gz 
Requires:       R-base 
Requires:	R-ggplot2
Requires:	R-ggpubr
Requires:	R-dplyr
Requires:	R-reshape2
Requires:	R-ellipsis
Requires:	R-generics
Requires:	R-glue
Requires:	R-lifecycle
Requires:	R-magrittr
Requires:	R-R6
Requires:	R-rlang
Requires:	R-tibble
Requires:	R-tidyselect
Requires:	R-vctrs
Requires:	R-pillar
Requires:	R-digest
Requires:	R-gtable
Requires:	R-isoband
Requires:	R-scales
Requires:	R-withr
Requires:	R-ggrepel
Requires:	R-ggsci
Requires:	R-tidyr
Requires:	R-purrr
Requires:	R-cowplot
Requires:	R-ggsignif
Requires:	R-gridExtra
Requires:	R-polynom
Requires:	R-rstatix
Requires:	R-plyr
Requires:	R-Rcpp
Requires:	R-stringr
Requires:	R-cli
Requires:	R-crayon
Requires:	R-fansi
Requires:	R-utf8
Requires:	R-broom
Requires:	R-corrplot
Requires:	R-car
Requires:	R-farver
Requires:	R-labeling
Requires:	R-munsell
Requires:	R-RColorBrewer
Requires:	R-viridisLite
Requires:	R-stringi
Requires:	R-pkgconfig
Requires:	R-cpp11
Requires:	R-backports
Requires:	R-carData
Requires:	R-abind
Requires:	R-pbkrtest
Requires:	R-quantreg
Requires:	R-maptools
Requires:	R-rio
Requires:	R-lme4
Requires:	R-colorspace
Requires:	R-minqa
Requires:	R-nloptr
Requires:	R-statmod
Requires:	R-RcppEigen
Requires:	R-sp
Requires:	R-numDeriv
Requires:	R-knitr
Requires:	R-SparseM
Requires:	R-MatrixModels
Requires:	R-conquer
Requires:	R-haven
Requires:	R-curl
Requires:	R-data.table
Requires:	R-readxl
Requires:	R-openxlsx
Requires:	R-matrixStats
Requires:	R-RcppArmadillo
Requires:	R-forcats
Requires:	R-hms
Requires:	R-readr
Requires:	R-evaluate
Requires:	R-highr
Requires:	R-markdown
Requires:	R-yaml
Requires:	R-xfun
Requires:	R-zip
Requires:	R-cellranger
Requires:	R-progress
Requires:	R-rematch
Requires:	R-mime
Requires:	R-prettyunits
Requires:	R-clipr
Requires:	R-BH
 
# %%if 0%%{?sle_version} > 120400 || 0%%{?is_opensuse} 
# # Three others commonly needed 
# BuildRequires:  tex(ae.sty) 
# BuildRequires:  tex(fancyvrb.sty) 
# BuildRequires:  tex(inconsolata.sty) 
# BuildRequires:  tex(natbib.sty) 
# %else 
# BuildRequires:  texlive 
# %endif 
# BuildRequires:  texinfo 
BuildRequires:  fdupes 
BuildRequires:  R-base 
BuildRequires: 	R-ggplot2
BuildRequires: 	R-ggpubr
BuildRequires: 	R-dplyr
BuildRequires: 	R-reshape2
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BuildRequires: 	R-generics
BuildRequires: 	R-glue
BuildRequires: 	R-lifecycle
BuildRequires: 	R-magrittr
BuildRequires: 	R-R6
BuildRequires: 	R-rlang
BuildRequires: 	R-tibble
BuildRequires: 	R-tidyselect
BuildRequires: 	R-vctrs
BuildRequires: 	R-pillar
BuildRequires: 	R-digest
BuildRequires: 	R-gtable
BuildRequires: 	R-isoband
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BuildRequires: 	R-withr
BuildRequires: 	R-ggrepel
BuildRequires: 	R-ggsci
BuildRequires: 	R-tidyr
BuildRequires: 	R-purrr
BuildRequires: 	R-cowplot
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BuildRequires: 	R-munsell
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BuildRequires: 	R-mime
BuildRequires: 	R-prettyunits
BuildRequires: 	R-clipr
BuildRequires: 	R-BH-devel
 
Suggests:	R-knitr
Suggests:	R-rmarkdown
%description 
Provides functions to implement a hierarchical approach which is 
designed to perform joint analysis of summary statistics using the 
framework of Mendelian Randomization or transcriptome analysis. 
Reference: Lai Jiang, Shujing Xu, Nicholas Mancuso, Paul J. Newcombe, 
David V. Conti (2020). "A Hierarchical Approach Using Marginal Summary 
Statistics for Multiple Intermediates in a Mendelian Randomization or 
Transcriptome Analysis." <bioRxiv><doi:10.1101/2020.02.03.924241>. 
 
%prep 
%setup -q -c -n %{packname} 
# the next line is needed, because we build without --clean in between two packages 
rm -rf ~/.R  
 
 
%build 
 
%install 
mkdir -p %{buildroot}%{rlibdir} 
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname} 
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) 
rm -f %{buildroot}%{rlibdir}/R.css 
%fdupes -s %{buildroot}%{rlibdir} 
 
#%%check 
#%%{_bindir}/R CMD check %%{packname} 
 
%files 
%dir %{rlibdir}/%{packname} 
%doc %{rlibdir}/%{packname}/DESCRIPTION
%{rlibdir}/%{packname}/INDEX
%license %{rlibdir}/%{packname}/LICENSE
%{rlibdir}/%{packname}/Meta
%{rlibdir}/%{packname}/NAMESPACE
%{rlibdir}/%{packname}/R
%{rlibdir}/%{packname}/data
%{rlibdir}/%{packname}/doc
%doc %{rlibdir}/%{packname}/help
%doc %{rlibdir}/%{packname}/html
 
%changelog

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File R-hJAM.spec of Package R-hJAM (Revision 1dae49d4087ed8fcd53dd421e0f8965f)

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