openSUSE Build Service

Overview Repositories Revisions Requests Users Attributes Meta

File R-hJAM.spec of Package R-hJAM (Revision e4551f96f66b2d882f40424e91de7fa1)

Currently displaying revision e4551f96f66b2d882f40424e91de7fa1 , Show latest

# Automatically generated by CRAN2OBS
# 
# spec file for package hJAM 
# This file is (mostly) auto-generated using information 
# in the package source, esp. Description and Summary. 
# Improvements in that area should be discussed with upstream. 
# 
# Copyright (c) 2020 SUSE LINUX GmbH, Nuernberg, Germany. 
# 
# All modifications and additions to the file contributed by third parties 
# remain the property of their copyright owners, unless otherwise agreed 
# upon. The license for this file, and modifications and additions to the 
# file, is the same license as for the pristine package itself (unless the 
# license for the pristine package is not an Open Source License, in which 
# case the license is the MIT License). An "Open Source License" is a 
# license that conforms to the Open Source Definition (Version 1.9) 
# published by the Open Source Initiative. 
#  
# Please submit bugfixes or comments via http://bugs.opensuse.org/ 
# 
 
%global packname  hJAM 
%global rlibdir   %{_libdir}/R/library 
 
Name:           R-%{packname} 
Version:        1.0.0 
Release:        0 
Summary:        Hierarchical Joint Analysis of Marginal Summary Statistics 
Group:          Development/Libraries/Other 
License:        MIT + file LICENSE 
URL:            http://cran.r-project.org/web/packages/%{packname} 
Source:         hJAM_1.0.0.tar.gz 
BuildRoot:      %{_tmppath}/%{name}-%{version}-build 
Requires:       R-base 
Requires:	R-ggplot2
Requires:	R-ggpubr
Requires:	R-dplyr
Requires:	R-reshape2
Requires:	R-ellipsis
Requires:	R-generics
Requires:	R-glue
Requires:	R-lifecycle
Requires:	R-magrittr
Requires:	R-R6
Requires:	R-rlang
Requires:	R-tibble
Requires:	R-tidyselect
Requires:	R-vctrs
Requires:	R-digest
Requires:	R-gtable
Requires:	R-isoband
Requires:	R-scales
Requires:	R-withr
Requires:	R-ggrepel
Requires:	R-ggsci
Requires:	R-tidyr
Requires:	R-purrr
Requires:	R-cowplot
Requires:	R-ggsignif
Requires:	R-gridExtra
Requires:	R-polynom
Requires:	R-rstatix
Requires:	R-plyr
Requires:	R-Rcpp
Requires:	R-stringr
Requires:	R-testthat
Requires:	R-broom
Requires:	R-corrplot
Requires:	R-car
Requires:	R-farver
Requires:	R-labeling
Requires:	R-munsell
Requires:	R-RColorBrewer
Requires:	R-viridisLite
Requires:	R-stringi
Requires:	R-cli
Requires:	R-crayon
Requires:	R-fansi
Requires:	R-pillar
Requires:	R-pkgconfig
Requires:	R-cpp11
Requires:	R-backports
Requires:	R-carData
Requires:	R-abind
Requires:	R-pbkrtest
Requires:	R-quantreg
Requires:	R-maptools
Requires:	R-rio
Requires:	R-lme4
Requires:	R-assertthat
Requires:	R-colorspace
Requires:	R-utf8
Requires:	R-brio
Requires:	R-callr
Requires:	R-desc
Requires:	R-evaluate
Requires:	R-jsonlite
Requires:	R-pkgload
Requires:	R-praise
Requires:	R-processx
Requires:	R-ps
Requires:	R-waldo
Requires:	R-rprojroot
Requires:	R-minqa
Requires:	R-nloptr
Requires:	R-statmod
Requires:	R-RcppEigen
Requires:	R-sp
Requires:	R-pkgbuild
Requires:	R-rstudioapi
Requires:	R-SparseM
Requires:	R-MatrixModels
Requires:	R-conquer
Requires:	R-haven
Requires:	R-curl
Requires:	R-data.table
Requires:	R-readxl
Requires:	R-openxlsx
Requires:	R-diffobj
Requires:	R-rematch2
Requires:	R-matrixStats
Requires:	R-RcppArmadillo
Requires:	R-forcats
Requires:	R-hms
Requires:	R-readr
Requires:	R-zip
Requires:	R-prettyunits
Requires:	R-cellranger
Requires:	R-progress
Requires:	R-rematch
Requires:	R-clipr
Requires:	R-BH
 
%if 0%{?sle_version} > 120400 || 0%{?is_opensuse} 
# Three others commonly needed 
BuildRequires:  tex(ae.sty) 
BuildRequires:  tex(fancyvrb.sty) 
BuildRequires:  tex(inconsolata.sty) 
BuildRequires:  tex(natbib.sty) 
%else 
BuildRequires:  texlive 
%endif 
BuildRequires:  texinfo 
BuildRequires:  fdupes 
BuildRequires:  R-base 
BuildRequires: 	R-ggplot2
BuildRequires: 	R-ggpubr
BuildRequires: 	R-dplyr
BuildRequires: 	R-reshape2
BuildRequires: 	R-ellipsis
BuildRequires: 	R-generics
BuildRequires: 	R-glue
BuildRequires: 	R-lifecycle
BuildRequires: 	R-magrittr
BuildRequires: 	R-R6
BuildRequires: 	R-rlang
BuildRequires: 	R-tibble
BuildRequires: 	R-tidyselect
BuildRequires: 	R-vctrs
BuildRequires: 	R-digest
BuildRequires: 	R-gtable
BuildRequires: 	R-isoband
BuildRequires: 	R-scales
BuildRequires: 	R-withr
BuildRequires: 	R-ggrepel
BuildRequires: 	R-ggsci
BuildRequires: 	R-tidyr
BuildRequires: 	R-purrr
BuildRequires: 	R-cowplot
BuildRequires: 	R-ggsignif
BuildRequires: 	R-gridExtra
BuildRequires: 	R-polynom
BuildRequires: 	R-rstatix
BuildRequires: 	R-plyr
BuildRequires: 	R-Rcpp-devel
BuildRequires: 	R-stringr
BuildRequires: 	R-testthat
BuildRequires: 	R-broom
BuildRequires: 	R-corrplot
BuildRequires: 	R-car
BuildRequires: 	R-farver
BuildRequires: 	R-labeling
BuildRequires: 	R-munsell
BuildRequires: 	R-RColorBrewer
BuildRequires: 	R-viridisLite
BuildRequires: 	R-stringi
BuildRequires: 	R-cli
BuildRequires: 	R-crayon
BuildRequires: 	R-fansi
BuildRequires: 	R-pillar
BuildRequires: 	R-pkgconfig
BuildRequires: 	R-cpp11-devel
BuildRequires: 	R-backports
BuildRequires: 	R-carData
BuildRequires: 	R-abind
BuildRequires: 	R-pbkrtest
BuildRequires: 	R-quantreg
BuildRequires: 	R-maptools
BuildRequires: 	R-rio
BuildRequires: 	R-lme4
BuildRequires: 	R-assertthat
BuildRequires: 	R-colorspace
BuildRequires: 	R-utf8
BuildRequires: 	R-brio
BuildRequires: 	R-callr
BuildRequires: 	R-desc
BuildRequires: 	R-evaluate
BuildRequires: 	R-jsonlite
BuildRequires: 	R-pkgload
BuildRequires: 	R-praise
BuildRequires: 	R-processx
BuildRequires: 	R-ps
BuildRequires: 	R-waldo
BuildRequires: 	R-rprojroot
BuildRequires: 	R-minqa
BuildRequires: 	R-nloptr
BuildRequires: 	R-statmod
BuildRequires: 	R-RcppEigen-devel
BuildRequires: 	R-sp
BuildRequires: 	R-pkgbuild
BuildRequires: 	R-rstudioapi
BuildRequires: 	R-SparseM
BuildRequires: 	R-MatrixModels
BuildRequires: 	R-conquer
BuildRequires: 	R-haven
BuildRequires: 	R-curl
BuildRequires: 	R-data.table
BuildRequires: 	R-readxl
BuildRequires: 	R-openxlsx
BuildRequires: 	R-diffobj
BuildRequires: 	R-rematch2
BuildRequires: 	R-matrixStats
BuildRequires: 	R-RcppArmadillo-devel
BuildRequires: 	R-forcats
BuildRequires: 	R-hms
BuildRequires: 	R-readr
BuildRequires: 	R-zip
BuildRequires: 	R-prettyunits
BuildRequires: 	R-cellranger
BuildRequires: 	R-progress
BuildRequires: 	R-rematch
BuildRequires: 	R-clipr
BuildRequires: 	R-BH-devel
 
Recommends:	R-knitr
Recommends:	R-rmarkdown
%description 
Provides functions to implement a hierarchical approach which is 
designed to perform joint analysis of summary statistics using the 
framework of Mendelian Randomization or transcriptome analysis. 
Reference: Lai Jiang, Shujing Xu, Nicholas Mancuso, Paul J. Newcombe, 
David V. Conti (2020). "A Hierarchical Approach Using Marginal Summary 
Statistics for Multiple Intermediates in a Mendelian Randomization or 
Transcriptome Analysis." <bioRxiv><doi:10.1101/2020.02.03.924241>. 
 
%prep 
%setup -q -c -n %{packname} 
 
%build 
 
%install 
mkdir -p %{buildroot}%{rlibdir} 
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname} 
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) 
rm -f %{buildroot}%{rlibdir}/R.css 
 
#%%check 
#%%{_bindir}/R CMD check %%{packname} 
 
%files 
%dir %{rlibdir}/%{packname} 
%doc %{rlibdir}/%{packname}/DESCRIPTION
%{rlibdir}/%{packname}/INDEX
%license %{rlibdir}/%{packname}/LICENSE
%{rlibdir}/%{packname}/Meta
%{rlibdir}/%{packname}/NAMESPACE
%{rlibdir}/%{packname}/R
%{rlibdir}/%{packname}/data
%{rlibdir}/%{packname}/doc
%doc %{rlibdir}/%{packname}/help
%doc %{rlibdir}/%{packname}/html
 
%changelog

Places

File R-hJAM.spec of Package R-hJAM (Revision e4551f96f66b2d882f40424e91de7fa1)

Places