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File R-phyr.spec of Package R-phyr

# Automatically generated by CRAN2OBS
# 
# Spec file for package phyr 
# This file is auto-generated using information in the package source, 
# esp. Description and Summary. Improvements in that area should be 
# discussed with upstream. 
# 
# Copyright (c) 2024 SUSE LINUX GmbH, Nuernberg, Germany. 
# 
# All modifications and additions to the file contributed by third parties 
# remain the property of their copyright owners, unless otherwise agreed 
# upon. The license for this file, and modifications and additions to the 
# file, is the same license as for the pristine package itself (unless the 
# license for the pristine package is not an Open Source License, in which 
# case the license is the MIT License). An "Open Source License" is a 
# license that conforms to the Open Source Definition (Version 1.9) 
# published by the Open Source Initiative. 
#  
# Please submit bugfixes or comments via http://bugs.opensuse.org/ 
# 
 
%global packname  phyr 
%global rlibdir   %{_libdir}/R/library 
 
Name:           R-%{packname} 
Version:        1.1.0 
Release:        0 
Summary:        Model Based Phylogenetic Analysis 
Group:          Development/Libraries/Other 
License:        GPL-3 
URL:            http://cran.r-project.org/web/packages/%{packname} 
Source:         phyr_1.1.0.tar.gz 
Requires:       R-base 
Requires:	R-ape
Requires:	R-Rcpp
Requires:	R-dplyr
Requires:	R-lme4
Requires:	R-nloptr
Requires:	R-gridExtra
Requires:	R-mvtnorm
Requires:	R-latticeExtra
Requires:	R-tidyr
Requires:	R-RcppArmadillo
Requires:	R-digest
Requires:	R-cli
Requires:	R-generics
Requires:	R-glue
Requires:	R-lifecycle
Requires:	R-magrittr
Requires:	R-pillar
Requires:	R-R6
Requires:	R-rlang
Requires:	R-tibble
Requires:	R-tidyselect
Requires:	R-vctrs
Requires:	R-gtable
Requires:	R-png
Requires:	R-jpeg
Requires:	R-RColorBrewer
Requires:	R-interp
Requires:	R-minqa
Requires:	R-RcppEigen
Requires:	R-purrr
Requires:	R-stringr
Requires:	R-cpp11
Requires:	R-deldir
Requires:	R-fansi
Requires:	R-utf8
Requires:	R-stringi
Requires:	R-pkgconfig
Requires:	R-withr
 
# %%if 0%%{?sle_version} > 120400 || 0%%{?is_opensuse} 
# # Three others commonly needed 
# BuildRequires:  tex(ae.sty) 
# BuildRequires:  tex(fancyvrb.sty) 
# BuildRequires:  tex(inconsolata.sty) 
# BuildRequires:  tex(natbib.sty) 
# %else 
# BuildRequires:  texlive 
# %endif 
# BuildRequires:  texinfo 
BuildRequires:  fdupes 
BuildRequires:  R-base 
BuildRequires: 	R-ape
BuildRequires: 	R-Rcpp-devel
BuildRequires: 	R-dplyr
BuildRequires: 	R-lme4
BuildRequires: 	R-nloptr
BuildRequires: 	R-gridExtra
BuildRequires: 	R-mvtnorm
BuildRequires: 	R-latticeExtra
BuildRequires: 	R-tidyr
BuildRequires: 	R-RcppArmadillo-devel
BuildRequires: 	R-digest
BuildRequires: 	R-cli
BuildRequires: 	R-generics
BuildRequires: 	R-glue
BuildRequires: 	R-lifecycle
BuildRequires: 	R-magrittr
BuildRequires: 	R-pillar
BuildRequires: 	R-R6
BuildRequires: 	R-rlang
BuildRequires: 	R-tibble
BuildRequires: 	R-tidyselect
BuildRequires: 	R-vctrs
BuildRequires: 	R-gtable
BuildRequires: 	R-png
BuildRequires: 	R-jpeg
BuildRequires: 	R-RColorBrewer
BuildRequires: 	R-interp
BuildRequires: 	R-minqa
BuildRequires: 	R-RcppEigen-devel
BuildRequires: 	R-purrr
BuildRequires: 	R-stringr
BuildRequires: 	R-cpp11-devel
BuildRequires: 	R-deldir
BuildRequires: 	R-fansi
BuildRequires: 	R-utf8
BuildRequires: 	R-stringi
BuildRequires: 	R-pkgconfig
BuildRequires: 	R-withr
BuildRequires:  gcc gcc-c++ gcc-fortran
 
Suggests:	R-testthat
Suggests:	R-pez
Suggests:	R-knitr
Suggests:	R-rmarkdown
Suggests:	R-covr
Suggests:	R-picante
Suggests:	R-rbenchmark
Suggests:	R-INLA
Suggests:	R-MCMCglmm
Suggests:	R-logistf
Suggests:	R-phylolm
Suggests:	R-ggplot2
Suggests:	R-ggridges
Suggests:	R-DHARMa
Suggests:	R-rr2
%description 
A collection of functions to do model-based phylogenetic analysis. It 
includes functions to calculate community phylogenetic diversity, to 
estimate correlations among functional traits while accounting for 
phylogenetic relationships, and to fit phylogenetic generalized linear 
mixed models. The Bayesian phylogenetic generalized linear mixed models 
are fitted with the 'INLA' package (<https://www.r-inla.org>). 
 
%prep 
%setup -q -c -n %{packname} 
# the next line is needed, because we build without --clean in between two packages 
rm -rf ~/.R  
 
 
%build 
 
%install 
mkdir -p %{buildroot}%{rlibdir} 
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname} 
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) 
rm -f %{buildroot}%{rlibdir}/R.css 
%fdupes -s %{buildroot}%{rlibdir} 
 
#%%check 
#%%{_bindir}/R CMD check %%{packname} 
 
%files 
%dir %{rlibdir}/%{packname} 
%doc %{rlibdir}/%{packname}/DESCRIPTION
%{rlibdir}/%{packname}/INDEX
%{rlibdir}/%{packname}/Meta
%{rlibdir}/%{packname}/NAMESPACE
%doc %{rlibdir}/%{packname}/NEWS.md
%{rlibdir}/%{packname}/R
%{rlibdir}/%{packname}/data
%{rlibdir}/%{packname}/doc
%{rlibdir}/%{packname}/extra_data
%doc %{rlibdir}/%{packname}/help
%doc %{rlibdir}/%{packname}/html
%{rlibdir}/%{packname}/libs
 
%changelog

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File R-phyr.spec of Package R-phyr

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