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File R-phyr.spec of Package R-phyr (Revision 46cd8eefcd591e2f8b603f89e61bd8ae)

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# Automatically generated by CRAN2OBS
# 
# spec file for package phyr 
# This file is (mostly) auto-generated using information 
# in the package source, esp. Description and Summary. 
# Improvements in that area should be discussed with upstream. 
# 
# Copyright (c) 2020 SUSE LINUX GmbH, Nuernberg, Germany. 
# 
# All modifications and additions to the file contributed by third parties 
# remain the property of their copyright owners, unless otherwise agreed 
# upon. The license for this file, and modifications and additions to the 
# file, is the same license as for the pristine package itself (unless the 
# license for the pristine package is not an Open Source License, in which 
# case the license is the MIT License). An "Open Source License" is a 
# license that conforms to the Open Source Definition (Version 1.9) 
# published by the Open Source Initiative. 
#  
# Please submit bugfixes or comments via http://bugs.opensuse.org/ 
# 
 
%global packname  phyr 
%global rlibdir   %{_libdir}/R/library 
 
Name:           R-%{packname} 
Version:        1.0.2 
Release:        0 
Summary:        Model Based Phylogenetic Analysis 
Group:          Development/Libraries/Other 
License:        GPL-3 
URL:            http://cran.r-project.org/web/packages/%{packname} 
Source:         phyr_1.0.2.tar.gz 
BuildRoot:      %{_tmppath}/%{name}-%{version}-build 
Requires:       R-base 
Requires:	R-ape
Requires:	R-Rcpp
Requires:	R-dplyr
Requires:	R-lme4
Requires:	R-nloptr
Requires:	R-gridExtra
Requires:	R-mvtnorm
Requires:	R-latticeExtra
Requires:	R-RcppArmadillo
Requires:	R-ellipsis
Requires:	R-generics
Requires:	R-glue
Requires:	R-lifecycle
Requires:	R-magrittr
Requires:	R-R6
Requires:	R-rlang
Requires:	R-tibble
Requires:	R-tidyselect
Requires:	R-vctrs
Requires:	R-gtable
Requires:	R-png
Requires:	R-jpeg
Requires:	R-RColorBrewer
Requires:	R-minqa
Requires:	R-statmod
Requires:	R-RcppEigen
Requires:	R-cli
Requires:	R-crayon
Requires:	R-fansi
Requires:	R-pillar
Requires:	R-pkgconfig
Requires:	R-purrr
Requires:	R-digest
Requires:	R-assertthat
Requires:	R-utf8
 
%if 0%{?sle_version} > 120400 || 0%{?is_opensuse} 
# Three others commonly needed 
BuildRequires:  tex(ae.sty) 
BuildRequires:  tex(fancyvrb.sty) 
BuildRequires:  tex(inconsolata.sty) 
BuildRequires:  tex(natbib.sty) 
%else 
BuildRequires:  texlive 
%endif 
BuildRequires:   texinfo 
BuildRequires:   fdupes 
BuildRequires:   R-base 
BuildRequires: 	R-ape
BuildRequires: 	R-Rcpp-devel
BuildRequires: 	R-dplyr
BuildRequires: 	R-lme4
BuildRequires: 	R-nloptr
BuildRequires: 	R-gridExtra
BuildRequires: 	R-mvtnorm
BuildRequires: 	R-latticeExtra
BuildRequires: 	R-RcppArmadillo-devel
BuildRequires: 	R-ellipsis
BuildRequires: 	R-generics
BuildRequires: 	R-glue
BuildRequires: 	R-lifecycle
BuildRequires: 	R-magrittr
BuildRequires: 	R-R6
BuildRequires: 	R-rlang
BuildRequires: 	R-tibble
BuildRequires: 	R-tidyselect
BuildRequires: 	R-vctrs
BuildRequires: 	R-gtable
BuildRequires: 	R-png
BuildRequires: 	R-jpeg
BuildRequires: 	R-RColorBrewer
BuildRequires: 	R-minqa
BuildRequires: 	R-statmod
BuildRequires: 	R-RcppEigen-devel
BuildRequires: 	R-cli
BuildRequires: 	R-crayon
BuildRequires: 	R-fansi
BuildRequires: 	R-pillar
BuildRequires: 	R-pkgconfig
BuildRequires: 	R-purrr
BuildRequires: 	R-digest
BuildRequires: 	R-assertthat
BuildRequires: 	R-utf8
BuildRequires:   gcc gcc-c++ gcc-fortran
 
Recommends:	R-testthat
Recommends:	R-pez
Recommends:	R-tidyr
Recommends:	R-knitr
Recommends:	R-rmarkdown
Recommends:	R-covr
Recommends:	R-picante
Recommends:	R-rbenchmark
Recommends:	R-INLA
Recommends:	R-MCMCglmm
Recommends:	R-logistf
Recommends:	R-phylolm
%description 
A collection of functions to do model-based phylogenetic analysis. 
It includes functions to calculate community phylogenetic diversity, 
to estimate correlations among functional traits while accounting for 
phylogenetic relationships, and to fit phylogenetic generalized linear 
mixed models. The Bayesian phylogenetic generalized linear mixed models 
are fitted with the 'INLA' package (<http://www.r-inla.org>). 
 
%prep 
%setup -q -c -n %{packname} 
 
%build 
 
%install 
mkdir -p %{buildroot}%{rlibdir} 
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname} 
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) 
rm -f %{buildroot}%{rlibdir}/R.css 
 
#%%check 
#%%{_bindir}/R CMD check %%{packname} 
 
%files 
%dir %{rlibdir}/%{packname} 
%doc %{rlibdir}/%{packname}/DESCRIPTION
%{rlibdir}/%{packname}/INDEX
%{rlibdir}/%{packname}/Meta
%{rlibdir}/%{packname}/NAMESPACE
%{rlibdir}/%{packname}/R
%{rlibdir}/%{packname}/data
%{rlibdir}/%{packname}/doc
%{rlibdir}/%{packname}/extra_data
%doc %{rlibdir}/%{packname}/help
%doc %{rlibdir}/%{packname}/html
%{rlibdir}/%{packname}/libs
 
%changelog

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File R-phyr.spec of Package R-phyr (Revision 46cd8eefcd591e2f8b603f89e61bd8ae)

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