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File R-phyr.spec of Package R-phyr (Revision fafbaf9bef6f6799854f987e9f2dc109)

Currently displaying revision fafbaf9bef6f6799854f987e9f2dc109 , Show latest

# Automatically generated by CRAN2OBS
# 
# Spec file for package phyr 
# This file is auto-generated using information in the package source, 
# esp. Description and Summary. Improvements in that area should be 
# discussed with upstream. 
# 
# Copyright (c) 2021 SUSE LINUX GmbH, Nuernberg, Germany. 
# 
# All modifications and additions to the file contributed by third parties 
# remain the property of their copyright owners, unless otherwise agreed 
# upon. The license for this file, and modifications and additions to the 
# file, is the same license as for the pristine package itself (unless the 
# license for the pristine package is not an Open Source License, in which 
# case the license is the MIT License). An "Open Source License" is a 
# license that conforms to the Open Source Definition (Version 1.9) 
# published by the Open Source Initiative. 
#  
# Please submit bugfixes or comments via http://bugs.opensuse.org/ 
# 
 
%global packname  phyr 
%global rlibdir   %{_libdir}/R/library 
 
Name:           R-%{packname} 
Version:        1.1.0 
Release:        0 
Summary:        Model Based Phylogenetic Analysis 
Group:          Development/Libraries/Other 
License:        GPL-3 
URL:            http://cran.r-project.org/web/packages/%{packname} 
Source:         phyr_1.1.0.tar.gz 
Requires:       R-base 
Requires:	R-ape
Requires:	R-Rcpp
Requires:	R-dplyr
Requires:	R-lme4
Requires:	R-nloptr
Requires:	R-gridExtra
Requires:	R-mvtnorm
Requires:	R-latticeExtra
Requires:	R-tidyr
Requires:	R-RcppArmadillo
Requires:	R-ellipsis
Requires:	R-generics
Requires:	R-glue
Requires:	R-lifecycle
Requires:	R-magrittr
Requires:	R-R6
Requires:	R-rlang
Requires:	R-tibble
Requires:	R-tidyselect
Requires:	R-vctrs
Requires:	R-pillar
Requires:	R-gtable
Requires:	R-png
Requires:	R-jpeg
Requires:	R-RColorBrewer
Requires:	R-minqa
Requires:	R-statmod
Requires:	R-RcppEigen
Requires:	R-purrr
Requires:	R-cpp11
Requires:	R-cli
Requires:	R-crayon
Requires:	R-fansi
Requires:	R-utf8
Requires:	R-pkgconfig
 
# %%if 0%%{?sle_version} > 120400 || 0%%{?is_opensuse} 
# # Three others commonly needed 
# BuildRequires:  tex(ae.sty) 
# BuildRequires:  tex(fancyvrb.sty) 
# BuildRequires:  tex(inconsolata.sty) 
# BuildRequires:  tex(natbib.sty) 
# %else 
# BuildRequires:  texlive 
# %endif 
# BuildRequires:  texinfo 
BuildRequires:  fdupes 
BuildRequires:  R-base 
BuildRequires: 	R-ape
BuildRequires: 	R-Rcpp-devel
BuildRequires: 	R-dplyr
BuildRequires: 	R-lme4
BuildRequires: 	R-nloptr
BuildRequires: 	R-gridExtra
BuildRequires: 	R-mvtnorm
BuildRequires: 	R-latticeExtra
BuildRequires: 	R-tidyr
BuildRequires: 	R-RcppArmadillo-devel
BuildRequires: 	R-ellipsis
BuildRequires: 	R-generics
BuildRequires: 	R-glue
BuildRequires: 	R-lifecycle
BuildRequires: 	R-magrittr
BuildRequires: 	R-R6
BuildRequires: 	R-rlang
BuildRequires: 	R-tibble
BuildRequires: 	R-tidyselect
BuildRequires: 	R-vctrs
BuildRequires: 	R-pillar
BuildRequires: 	R-gtable
BuildRequires: 	R-png
BuildRequires: 	R-jpeg
BuildRequires: 	R-RColorBrewer
BuildRequires: 	R-minqa
BuildRequires: 	R-statmod
BuildRequires: 	R-RcppEigen-devel
BuildRequires: 	R-purrr
BuildRequires: 	R-cpp11-devel
BuildRequires: 	R-cli
BuildRequires: 	R-crayon
BuildRequires: 	R-fansi
BuildRequires: 	R-utf8
BuildRequires: 	R-pkgconfig
BuildRequires:   gcc gcc-c++ gcc-fortran
 
Suggests:	R-testthat
Suggests:	R-pez
Suggests:	R-knitr
Suggests:	R-rmarkdown
Suggests:	R-covr
Suggests:	R-picante
Suggests:	R-rbenchmark
Suggests:	R-INLA
Suggests:	R-MCMCglmm
Suggests:	R-logistf
Suggests:	R-phylolm
Suggests:	R-ggplot2
Suggests:	R-ggridges
Suggests:	R-DHARMa
Suggests:	R-rr2
%description 
A collection of functions to do model-based phylogenetic analysis. It 
includes functions to calculate community phylogenetic diversity, to 
estimate correlations among functional traits while accounting for 
phylogenetic relationships, and to fit phylogenetic generalized linear 
mixed models. The Bayesian phylogenetic generalized linear mixed models 
are fitted with the 'INLA' package (<https://www.r-inla.org>). 
 
%prep 
%setup -q -c -n %{packname} 
# the next line is needed, because we build without --clean in between two packages 
rm -rf ~/.R  
 
 
%build 
 
%install 
mkdir -p %{buildroot}%{rlibdir} 
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname} 
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) 
rm -f %{buildroot}%{rlibdir}/R.css 
%fdupes -s %{buildroot}%{rlibdir} 
 
#%%check 
#%%{_bindir}/R CMD check %%{packname} 
 
%files 
%dir %{rlibdir}/%{packname} 
%doc %{rlibdir}/%{packname}/DESCRIPTION
%{rlibdir}/%{packname}/INDEX
%{rlibdir}/%{packname}/Meta
%{rlibdir}/%{packname}/NAMESPACE
%doc %{rlibdir}/%{packname}/NEWS.md
%{rlibdir}/%{packname}/R
%{rlibdir}/%{packname}/data
%{rlibdir}/%{packname}/doc
%{rlibdir}/%{packname}/extra_data
%doc %{rlibdir}/%{packname}/help
%doc %{rlibdir}/%{packname}/html
%{rlibdir}/%{packname}/libs
 
%changelog

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File R-phyr.spec of Package R-phyr (Revision fafbaf9bef6f6799854f987e9f2dc109)

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