File R-prioriactions.spec of Package R-prioriactions

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File R-prioriactions.spec of Package R-prioriactions

# Automatically generated by CRAN2OBS
# 
# Spec file for package prioriactions 
# This file is auto-generated using information in the package source, 
# esp. Description and Summary. Improvements in that area should be 
# discussed with upstream. 
# 
# Copyright (c) 2024 SUSE LINUX GmbH, Nuernberg, Germany. 
# 
# All modifications and additions to the file contributed by third parties 
# remain the property of their copyright owners, unless otherwise agreed 
# upon. The license for this file, and modifications and additions to the 
# file, is the same license as for the pristine package itself (unless the 
# license for the pristine package is not an Open Source License, in which 
# case the license is the MIT License). An "Open Source License" is a 
# license that conforms to the Open Source Definition (Version 1.9) 
# published by the Open Source Initiative. 
#  
# Please submit bugfixes or comments via http://bugs.opensuse.org/ 
# 
 
%global packname  prioriactions 
%global rlibdir   %{_libdir}/R/library 
 
Name:           R-%{packname} 
Version:        0.5.0 
Release:        0 
Summary:        Multi-Action Conservation Planning 
Group:          Development/Libraries/Other 
License:        GPL (>= 2) 
URL:            http://cran.r-project.org/web/packages/%{packname} 
Source:         prioriactions_0.5.0.tar.gz 
Requires:       R-base 
Requires:	R-assertthat
Requires:	R-proto
Requires:	R-magrittr
Requires:	R-tidyr
Requires:	R-dplyr
Requires:	R-Rcpp
Requires:	R-rlang
Requires:	R-RcppArmadillo
Requires:	R-BH
Requires:	R-cli
Requires:	R-generics
Requires:	R-glue
Requires:	R-lifecycle
Requires:	R-pillar
Requires:	R-R6
Requires:	R-tibble
Requires:	R-tidyselect
Requires:	R-vctrs
Requires:	R-purrr
Requires:	R-stringr
Requires:	R-cpp11
Requires:	R-fansi
Requires:	R-utf8
Requires:	R-stringi
Requires:	R-pkgconfig
Requires:	R-withr
 
# %%if 0%%{?sle_version} > 120400 || 0%%{?is_opensuse} 
# # Three others commonly needed 
# BuildRequires:  tex(ae.sty) 
# BuildRequires:  tex(fancyvrb.sty) 
# BuildRequires:  tex(inconsolata.sty) 
# BuildRequires:  tex(natbib.sty) 
# %else 
# BuildRequires:  texlive 
# %endif 
# BuildRequires:  texinfo 
BuildRequires:  fdupes 
BuildRequires:  R-base 
BuildRequires: 	R-assertthat
BuildRequires: 	R-proto
BuildRequires: 	R-magrittr
BuildRequires: 	R-tidyr
BuildRequires: 	R-dplyr
BuildRequires: 	R-Rcpp-devel
BuildRequires: 	R-rlang
BuildRequires: 	R-RcppArmadillo-devel
BuildRequires: 	R-BH-devel
BuildRequires: 	R-cli
BuildRequires: 	R-generics
BuildRequires: 	R-glue
BuildRequires: 	R-lifecycle
BuildRequires: 	R-pillar
BuildRequires: 	R-R6
BuildRequires: 	R-tibble
BuildRequires: 	R-tidyselect
BuildRequires: 	R-vctrs
BuildRequires: 	R-purrr
BuildRequires: 	R-stringr
BuildRequires: 	R-cpp11-devel
BuildRequires: 	R-fansi
BuildRequires: 	R-utf8
BuildRequires: 	R-stringi
BuildRequires: 	R-pkgconfig
BuildRequires: 	R-withr
BuildRequires:  gcc gcc-c++ gcc-fortran
 
Suggests:	R-knitr
Suggests:	R-gurobi
Suggests:	R-Rcplex
Suggests:	R-roxygen2
Suggests:	R-rcbc
Suggests:	R-Rsymphony
Suggests:	R-rmarkdown
Suggests:	R-testthat
Suggests:	R-raster
Suggests:	R-tmap
Suggests:	R-sp
Suggests:	R-viridis
Suggests:	R-markdown
Suggests:	R-data.table
Suggests:	R-purrr
Suggests:	R-readr
Suggests:	R-slam
Suggests:	R-tibble
Suggests:	R-reshape2
%description 
This uses a mixed integer mathematical programming (MIP) approach for 
building and solving multi-action planning problems, where the goal is 
to find an optimal combination of management actions that abate 
threats, in an efficient way while accounting for spatial aspects. 
Thus, optimizing the connectivity and conservation effectiveness of the 
prioritized units and of the deployed actions. The package is capable 
of handling different commercial (gurobi, CPLEX) and non-commercial 
(symphony, CBC) MIP solvers. Gurobi optimization solver can be 
installed using comprehensive instructions in the 'gurobi' installation 
vignette of the prioritizr package (available in 
<https://prioritizr.net/articles/gurobi_installation_guide.html>). 
Instead, 'CPLEX' optimization solver can be obtain from IBM CPLEX web 
page (available here 
<https://www.ibm.com/es-es/products/ilog-cplex-optimization-studio>). 
Additionally, the 'rcbc' R package (available at 
<https://github.com/dirkschumacher/rcbc>) can be used to obtain 
solutions using the CBC optimization software 
(<https://github.com/coin-or/Cbc>). Methods used in the package refers 
to Salgado-Rojas et al. (2020) <doi:10.1016/j.ecolmodel.2019.108901>, 
Beyer et al. (2016) <doi:10.1016/j.ecolmodel.2016.02.005>, Cattarino et 
al. (2015) <doi:10.1371/journal.pone.0128027> and Watts et al. (2009) 
<doi:10.1016/j.envsoft.2009.06.005>. See the prioriactions website for 
more information, documentations and examples. 
 
%prep 
%setup -q -c -n %{packname} 
# the next line is needed, because we build without --clean in between two packages 
rm -rf ~/.R  
 
 
%build 
 
%install 
mkdir -p %{buildroot}%{rlibdir} 
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname} 
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) 
rm -f %{buildroot}%{rlibdir}/R.css 
%fdupes -s %{buildroot}%{rlibdir} 
 
#%%check 
#%%{_bindir}/R CMD check %%{packname} 
 
%files 
%dir %{rlibdir}/%{packname} 
%doc %{rlibdir}/%{packname}/DESCRIPTION
%{rlibdir}/%{packname}/INDEX
%{rlibdir}/%{packname}/Meta
%{rlibdir}/%{packname}/NAMESPACE
%doc %{rlibdir}/%{packname}/NEWS.md
%{rlibdir}/%{packname}/R
%{rlibdir}/%{packname}/data
%{rlibdir}/%{packname}/doc
%{rlibdir}/%{packname}/extdata
%doc %{rlibdir}/%{packname}/help
%doc %{rlibdir}/%{packname}/html
%{rlibdir}/%{packname}/libs
 
%changelog

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File R-prioriactions.spec of Package R-prioriactions

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