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File R-sisti.spec of Package R-sisti

# Automatically generated by CRAN2OBS
# 
# Spec file for package sisti 
# This file is auto-generated using information in the package source, 
# esp. Description and Summary. Improvements in that area should be 
# discussed with upstream. 
# 
# Copyright (c) 2024 SUSE LINUX GmbH, Nuernberg, Germany. 
# 
# All modifications and additions to the file contributed by third parties 
# remain the property of their copyright owners, unless otherwise agreed 
# upon. The license for this file, and modifications and additions to the 
# file, is the same license as for the pristine package itself (unless the 
# license for the pristine package is not an Open Source License, in which 
# case the license is the MIT License). An "Open Source License" is a 
# license that conforms to the Open Source Definition (Version 1.9) 
# published by the Open Source Initiative. 
#  
# Please submit bugfixes or comments via http://bugs.opensuse.org/ 
# 
 
%global packname  sisti 
%global rlibdir   %{_libdir}/R/library 
 
Name:           R-%{packname} 
Version:        0.0.1 
Release:        0 
Summary:        Real-Time PCR Data Sets by Sisti et al. (2010) 
Group:          Development/Libraries/Other 
License:        CC BY 4.0 
URL:            http://cran.r-project.org/web/packages/%{packname} 
Source:         sisti_0.0.1.tar.gz 
Requires:       R-base 
Requires:	R-tibble
Requires:	R-fansi
Requires:	R-lifecycle
Requires:	R-magrittr
Requires:	R-pillar
Requires:	R-pkgconfig
Requires:	R-rlang
Requires:	R-vctrs
Requires:	R-cli
Requires:	R-glue
Requires:	R-utf8
 
# %%if 0%%{?sle_version} > 120400 || 0%%{?is_opensuse} 
# # Three others commonly needed 
# BuildRequires:  tex(ae.sty) 
# BuildRequires:  tex(fancyvrb.sty) 
# BuildRequires:  tex(inconsolata.sty) 
# BuildRequires:  tex(natbib.sty) 
# %else 
# BuildRequires:  texlive 
# %endif 
# BuildRequires:  texinfo 
BuildRequires:  fdupes 
BuildRequires:  R-base 
BuildRequires: 	R-tibble
BuildRequires: 	R-fansi
BuildRequires: 	R-lifecycle
BuildRequires: 	R-magrittr
BuildRequires: 	R-pillar
BuildRequires: 	R-pkgconfig
BuildRequires: 	R-rlang
BuildRequires: 	R-vctrs
BuildRequires: 	R-cli
BuildRequires: 	R-glue
BuildRequires: 	R-utf8
 
%description 
This data package contains four datasets of quantitative PCR (qPCR) 
amplification curves that were used as supplementary data in the 
research article by Sisti et al. (2010), 
<doi:10.1186/1471-2105-11-186>. The primary dataset comprises a 
ten-fold dilution series spanning copy numbers from 3.14 × 10^7 to 3.14 
× 10^2, with twelve replicates per concentration. These samples are 
based on a pGEM-T Promega plasmid containing a 104 bp fragment of the 
mitochondrial gene NADH dehydrogenase 1 (MT-ND1), amplified using the 
ND1/ND2 primer pair. The remaining three datasets contain qPCR results 
in the presence of specific PCR inhibitors: tannic acid, immunoglobulin 
G (IgG), and quercetin, respectively, to assess their effects on the 
amplification process. These datasets are useful for researchers 
interested in PCR kinetics. The original raw data file is available as 
Additional File 1: 
<https://static-content.springer.com/esm/art%3A10.1186%2F1471-2105-11-186/MediaObjects/12859_2009_3643_MOESM1_ESM.XLS>. 
 
%prep 
%setup -q -c -n %{packname} 
# the next line is needed, because we build without --clean in between two packages 
rm -rf ~/.R  
 
 
%build 
 
%install 
mkdir -p %{buildroot}%{rlibdir} 
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname} 
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) 
rm -f %{buildroot}%{rlibdir}/R.css 
%fdupes -s %{buildroot}%{rlibdir} 
 
#%%check 
#%%{_bindir}/R CMD check %%{packname} 
 
%files 
%dir %{rlibdir}/%{packname} 
%doc %{rlibdir}/%{packname}/DESCRIPTION
%{rlibdir}/%{packname}/INDEX
%{rlibdir}/%{packname}/Meta
%{rlibdir}/%{packname}/NAMESPACE
%doc %{rlibdir}/%{packname}/NEWS.md
%{rlibdir}/%{packname}/R
%{rlibdir}/%{packname}/data
%doc %{rlibdir}/%{packname}/help
%doc %{rlibdir}/%{packname}/html
%{rlibdir}/%{packname}/
 
%changelog

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File R-sisti.spec of Package R-sisti

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