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File python-rpy2.changes of Package python-rpy2
------------------------------------------------------------------- Mon Feb 10 15:10:53 UTC 2020 - Todd R <toddrme2178@gmail.com> - Update to 3.2.6 + Bugs fixed * The conversion of date/time object with specified timezones was wrong when different than the local time zone * Iterating over :mod:`rpy2.situation.iter_info()` could result in a error because of a typo in the code. + Changes * :mod:`pandas` 1.0.0 breaks the conversion layer. A warning is not emitted whenever trying to use `pandas` >= 1.0. ------------------------------------------------------------------- Thu Jan 30 15:31:13 UTC 2020 - Todd R <toddrme2178@gmail.com> - Update to 3.2.5 * Delimit multi-line expressions with parenthesis rather than backslash. * Use Rf_initEmbeddedR(), remove setup_Rmainloop() (not necessary, it seems). - Update to 3.2.4 * Fix ABI mode - Update to 3.2.3 * Backport fix for segfault when parsing. ------------------------------------------------------------------- Wed Nov 27 16:05:54 UTC 2019 - Todd R <toddrme2178@gmail.com> - Update to version 3.2.2 + Bugs fixed * Python format error when trying to report that the system is not reported on Windows. * The setup script would error on build if R is not installed. It is now printing an error message. - Update to version 3.2.1 + Bugs fixed * The wrapper for the R package `dbplyr` could not import the underlying package (refactoring elsewhere was not propagated there). * Creating R objects called `names` `globalenv` caused the method :meth:`Sexp.names` to fail. * Whenever the pandas conversion was activated :class:`FloatSexpVector` instances with the R class `POSIXct` attached where not corrected mapped back to pandas datetime arrays.. * Fix installation when an installation when a prefix without write access is used. - Update to version 3.2.0 + New features * rpy2 can built and used with :mod:`cffi`'s ABI or API modes (releases 3.0.x and 3.1.x were using the ABI mode exclusively). At the time of writing the default is still the ABI mode but the choice can be controlled through the environment variable `RPY2_CFFI_MODE`. If set, possible values are `ABI` (default if the environment variable is not set), `API`, or `BOTH`. When the latter, both `API` and `ABI` modes are built, and the choice of which one to use can be made at run time. + Changes * The "consoleread" callback (reading input to the R console) is now assuming UTF-8 (was previously assuming ASCII) and is no longer trying to add a "new line" character at the end of the input. * Querying an R environment with an invalid key will generate a :class:`TypeError` or a :class:`ValueError` depending on the issue (rather than always :class:`ValueError` before. + Bugs fixed * `setup.py` is now again compatible with Python2. * Unit tests were failing if numpy is not installed. * :mod:`rpy2.situation` is no longer breaking when R is not the in path and there is no environment variable `R_HOME`. * Build script for the cffi interface is now using the environment variable `R_HOME` whenever defined (rather that always infer it from the R in the PATH). * Converting R strings back to Python was incorrectly using `Latin1` while `UTF-8` was intended. - Update to version 3.1.0 + New features * Python matrix multiplication (`__matmul__` / `@`) added to R :class:`Matrix` objects. * An :class:`threading.RLock` is added to :mod:`rpy2.rinterface_lib.openrlib` and is used by the context manager :func:`rpy2.rinterface_lib.memorymanagement.rmemory` to ensure that protect/unprotect cycles cannot be broken by thread switching, at least as long as the context manager is used to handle such cycles (see issue #571). * The documentation covers the use of notebooks (mainly Jupyter/Jupyterlab). * The PNG output in Jupyter notebooks R cells can now specify an argument `--type` (passed as the named argument `type` in the R function `png`). For example on some Linux systems and R installations, the type `cairo` can fix issues when alpha transparency is used. + Changes * Added callbacks for `ptr_R_Busy()` and `ptr_R_ProcessEvents()`. * `rstart` now an objects in :mod:`rpy2.rinterface_lib.embedded` (set to `None` until R is initialized). * Unit tests are included in a subpackage :mod:`rpy2.tests` as was the case before release 3.0.0. * Experimental initialization for Microsoft Windows. * :mod:`rpy2.situation` is now also reporting the rpy2 version. * :func:`rpy2.robjecs.package_utils.default_symbol_check_after` was renamed :func:`rpy2.robjecs.package_utils.default_symbol_resolve`. The named parameters `default_symbol_check_after` present in few methods in :mod:`rpy2.robjects.packages` and :mod:`rpy2.robjects.functions` were modified to keep a consistent naming. * Trying to instantiate an :class:`rpy2.rlike.container.OrdDict` with a a :class:`dict` will result in a :class:`TypeError` rather than a :class:`ValueError`. * Methods of :class:`rpy2.rlike.container.OrdDict` now raises a :class:`NotImplementedError` when not implemented. * The creation of R vectors from Python sequences is now relying on a method :meth:`_populate_r_vector` that allows vectorized implementation to to improve speed. * Continuous integration tests run against Python 3.6, 3.7, and 3.8. It is no longer checked against Python 3.5. + Bugs fixed * `aes` in :mod:`rpy2.robjects.lib.ggplot2` had stopped working with the R package ggplot2 reaching version 3.2.0.. * Better handling of recent :mod:`pandas` arrays with missing values. * The mapping of the R operator `%in%` reachable through the attribute `ro` of R vectors was always returning `True`. It is now working properly. * R POSIXct vectors with `NA` dates were triggering an error when converted in a data frame converted to :mod:`pandas`. ------------------------------------------------------------------- Thu Jul 25 17:54:48 UTC 2019 - Todd R <toddrme2178@gmail.com> - Update to Release 3.0.5 + Bugs fixed * No longer allow installation if Python 3 but < 3.5. * Fixed error `undefined symbol: DATAPTR` if R < 3.5. - Update to Release 3.0.4 + Bugs fixed * Fixed conversion of `pandas` :class:`Series` of dtype `pandas.Int32Dtype`, or `pandas.Int64Dtype`. - Update to Release 3.0.3 + Bugs fixed * Fixed the evaluation of R code using the "R magic" was delaying all output to the end of the execution of that code, independently of whether the attribute `cache_display_data` was `True` or `False`. * Fixed conversion of :class:`pandas.Series` of `dtype` "object" when all items are either all of the same type or are :obj:`None`. - Update to Release 3.0.2 + Bugs fixed * Failing to import `pandas` or `numpy` when loading the "R magic" extension for jupyter/ipython was hiding the cause of the error in the `ImportError` exception. * Fallback when an R `POSIXct` vector does not had an attribute `"tzone"`. * Callback for console reset was not set during R initialization. * Fixed rternalized function returning rpy2 objects. * `--vanilla` is no longer among the default options used to initialize R. - Update to Release 3.0.1 + Bugs fixed * Script to install R packages for docker image never made it to version control. * Conversion of R arrays/matrices into numpy object trigged a segfault during garbage collection. - Update to Release 3.0.0 + New features * rpy2 can be installed without a development environment. * Unit tests are now relying on the Python module `pytest`. * :attr:`rpy2.rinterface.NA_Integer` is now only defined when the embedded R is initialized. + Changes * complete rewrite of :mod:`rpy2.rinterface`. :mod:`cffi` is now used to interface with the R compiled shared library. This allows ABI calls and removes the need to compile binaries. However, if compilation is available (when installing or preparing pre-compiled binaries) faster implementations of performance bottlenecks will be available. * calling :func:`rpy2.rinterface.endr` multiple times is now only ending R the first time it is called (note: an ended R cannot successfully be re-initialized). * The conversion system in the mod:`rpy2.robjects.conversion` now has only two conversions `py2rpy` and rpy2py`. `py2rpy` tries to convert any Python object into an object rpy2 can use with R and `rpy2py` tries to convert any rpy2 object into a either a non-rpy2 Python object or a mod:`rpy2.robjects` level object. * The method `get` for R environments is now called `find()` to avoid confusion with the method of the same name in Python (:meth:`dict.get`). * :class:`rpy2.robjects.vectors.Vector`, :class:`rpy2.robjects.vectors.Matrix`, and :class:`rpy2.robjects.vectors.Array` can no longer be used to create R arrays of unspecified type. New type-specific classes (for example for vectors :class:`rpy2.robjects.vectors.IntVector`, :class:`rpy2.robjects.vectors.BoolVector`, :class:`rpy2.robjects.vectors.FloatVector`, :class:`rpy2.robjects.vectors.ComplexVector`, or :class:`rpy2.robjects.vectors.StrVector`) should be used instead. * mod:`rpy2.rpy_classic`, an implementation of the `rpy` interface using :mod:`rpy2.rinterface` is no longer available. * :class:`rpy2.robjects.ParsedCode` and :class:`rpy2.robjects.SourceCode` are moved to :class:`rpy2.robjects.packages.ParsedCode` and :class:`rpy2.robjects.packages.SourceCode`. + Bugs fixed * Row names in R data frames were lost when converting to pandas data frames. + Known issues * Mismatch between R's POSIXlt `wday` and Python time struct_time's `tm_wday`. - Update to Release 2.9.6 + Bugs fixed * Latest release of :mod:`pandas` deprecated :meth:`DataFrame.from_items`. * Latest release of :mod:`pandas` requires categories to be a list (not an other sequence). + Known issues * The numpy buffer implemented by R arrays is broken for complex numbers ------------------------------------------------------------------- Mon Dec 3 19:19:21 UTC 2018 - Todd R <toddrme2178@gmail.com> - Update to 2.9.5 * Missing values in pandas :class:`Category` series were creating invalid R factors when converted (issue #493). ------------------------------------------------------------------- Tue Aug 14 15:10:03 UTC 2018 - schwab@suse.de - Remove unused dependencies on blas libraries - Don't exclude post-build-checks ------------------------------------------------------------------- Wed Aug 8 17:33:45 UTC 2018 - toddrme2178@gmail.com - Update to 2.9.4 * Fallback for failure to import numpy or pandas is now dissociated from failure to import :mod:`numpy2ri` or :mod:`pandas2ri` (issue #463). * :func:`repr` for R POSIX date/time vectors is now showing a string representation of the date/time rather than the timestamp as a float (issue #467). * The HTML representation of R data frame (the default representation in the Jupyter notebook) was displaying an inconsistent number of rows (found while workin on issue #466). * Handle time zones in timezones in Pandas when converting to R data frames (issue #454). * When exiting the Python process, the R cleanup is now explicitly request to happen before Python's exit. This is preventing possible segfaults the process is terminating (issue #471). * dplyr method `ungroup()` was missing from :class:`rpy2.robjects.lib.dplyr.DataFrame` (issue #473). ------------------------------------------------------------------- Fri May 18 15:32:11 UTC 2018 - jengelh@inai.de - Ensure neutrality of description. Trim future goals from description. ------------------------------------------------------------------- Fri May 11 22:16:01 UTC 2018 - toddrme2178@gmail.com - Fix license ------------------------------------------------------------------- Thu May 3 14:07:08 UTC 2018 - toddrme2178@gmail.com - Use %license tag ------------------------------------------------------------------- Thu May 3 07:06:20 UTC 2018 - toddrme2178@gmail.com - Update to version 2.9.3 * Delegate finding where is local time zone file to either a user-specified module-level variable `default_timezone` or to the third-party module :mod:`tzlocal` (issue #448). - Update to version 2.9.2 + Changes * The pandas converter is converting :class:`pandas.Series` of `dtype` `"O"` to :class:`rpy2.robjects.vectors.StrVector` objects, issueing a warning about it (See issue #421). * The conversion of pandas data frame is now working with columns rather than rows (introduce in bug fix for issue #442 below) and this is expected to result in more efficient conversions. + Bugs fixed * Allow floats in figure sizes for R magic (Pull request #63) * Fixed pickling unpickling of robjects-level instances, regression introduced in fix for issue #432 with release 2.9.1 (issue #443). * Fixed broken unit test for columns of `dtype` `"O"` in `pandas` data frames. * Fixed incorrect conversion of R factors in data frames to columns of integers in pandas data frame (issue #442). - Update to version 2.9.1 + Changes * Fixing issue #432 (see Section Bugs fixed below) involved removed the method `__reduce__` previously provided for all rpy2 objects representing R objects. + Bugs fixed * An error when installing with an unsupported R version was fixed (issue #420). * The docstring for `rinterface.endr()` was improperly stating that the function was not taking any argument (issue #423). * Target version of dplyr and tidyr are now 0.7.4 and 0.7.2 respectively. * Fixed memory leak when pickling objects (issue #432). Fixing the leak caused a slight change in the API (see Section Changes above). * Conversion to :mod:`pandas` now handling R ordered factor (issue #398). :mod:`jinja2` was not listed as a dependency (issue #437). ------------------------------------------------------------------- Wed Aug 23 23:00:21 UTC 2017 - toddrme2178@gmail.com - Implement single-spec version - Update to version 2.9.0 * See changes at https://bitbucket.org/rpy2/rpy2/src/33ae1887a9cf3b624ea03b389835cd7a91cb815a/NEWS?at=RELEASE_2_9_0&fileviewer=file-view-default ------------------------------------------------------------------- Mon May 9 17:51:49 UTC 2016 - toddrme2178@gmail.com - Update to version 2.7.9 * Python objects exposed to R could lead to segfault when the Python process is exiting (issue #331) - specfile: * updated source url to files.pythonhosted.org - update to version 2.7.8: * New class :class:`rpy2.robjects.SourceCode`. The class extends Python's :class:`str` and is meant to represent R source code. An HTML renderer for the ipython notebook (syntax highlighting using :mod:`pygment` is also added). * New module :mod:`rpy2.robjects.lib.tidyr` providing a custom wrapper for the R library `tidyr` * The long-deprecated functions :func:`rpy2.rinterface.set_writeconsole` and :func:`rpy2.rinterface.get_writeconsole` are no longer available. One of :func:`rpy2.rinterface.set_writeconsole_regular` / :func:`rpy2.rinterface.set_writeconsole_warnerror` or :func:`rpy2.rinterface.get_writeconsole_regular` / :func:`rpy2.rinterface.get_writeconsole_warnerror` respectively should be used instead. * The attribute :attr:`rpy2.robjects.RObject.slots` can now be implictly interated on (the method :meth:`__iter__` is now an alias for :meth:`keys`). - specfile: * update copyright year - update to version 2.7.7: * Pickling `robjects`-level objects resulted in `rinterface`-level objects when unpickled (issue #324). - changes from version 2.7.6: * :mod:`rpy2.robjects.lib.ggplot2` was modified to match the newly released ggplot2-2.0.0. This is introducing API-breaking changes, which breaks the promise to keep the API stable through bugfix releases within series, but without it 2.7.x will not a work with new default installation of the R package ggplot2. - changes from version 2.7.5: * Division and floordivision through the delegator `.ro` provided with R vectors wrapped by `robjects`. (issue #320) * Memory leak when unserializing (unpickling) R objects bundled in Python objects (issue #321) - update to version 2.7.4: * Python 3.5 highlighted slightly incorrect C-level flags in rpy2 objects declarations, and :mod:`rpy2.robjects` could not be imported. * Fixed unit tests for rmagic when :mod:`numpy` is not installed, and for :mod:`numpy` is installed by :mod:`pandas` in missing. - update to version 2.7.3: * method :meth:`DataFrame.collect` in :mod:`rpy2.robjects.lib.dplyr` was not functioning. * Applied patch by Matthias Klose to fix implict pointer conversions. * :mod:`pandas2ri.ri2py_dataframe` is now propagating the row names in the R data frame into an index in the pandas data frame (issue #285) * methods `union`, `intersect`, `setdiff`, `ungroup` defined in the R package `dplyr` were missing from the `DataFrame` definition in :mod:`rpy2.robjects.lib.dplyr` - update to version 2.7.2: * methods `distinct`, `sample_n`, and `sample_frac` defined in the R package `rplyr` were missing from the `DataFrame` definition in :mod:`rpy2.robjects.lib.dplyr` * The fix for the inheritance problem with :mod:`rpy2.robjects.lib.dplyr.DataFrame` introduced a regression whenever `group_by` is used. * The methods to perform joins on dplyr `DataFrame` objects where not working properly. - update to version 2.7.1: * The :meth:`__repr__` for :mod:`robjects`-level vectors was broken for vectors of length 1 (issue #306) * The ipython notebook-based sections of the documentation were not building * Classes inheriting from :mod:`dplyr.DataFrame` had dplyr methods returning objects of their parent class. - specfile: * check for R-version >= 3.2 - update to version 2.7.0: * New exception :class:`rpy2.rinterface.RParsingError`. Errors occurring when parsing R code through :func:`rpy2.rinterface.parse` raise this exception (previously :class:`rpy2.rinterface.RRuntimeError`). * New class :class:`rpy2.robjects.conversion.Converter` to replace the `namedtuple` of the same name * New class :class:`rpy2.robjects.converter.ConversionContext`. This is a context manager allowing an easy setting of local conversion rules. The constructor has an alias called :meth:`rpy2.robjects.constructor.localconverter`. * New module :mod:`rpy2.robjects.lib.dplyr` providing a custom wrapper for the R library `dplyr` * Method :method:`Environment.items()` to iterate through the symbols and associated objects in an R environment. * Exception :class:`rpy2.rinterface.ParsingIncompleError`, a child class of :class:`rpy2.rinterface.ParsingError`, raised when calling :meth:`rpy2.rinteface.parse` results in R's C-level status to be `PARSE_INCOMPLETE`. This can make the Python implementation of an IDE for R easier. * Attribute :attr:`slots` for :mod:`rpy2.robjects`-level objects. The attribute is a :class:`rpy2.robjects.Rslots` which behaves like a Python mapping to provide access to R-attributes for the object (see issue #275). * The R "magic" for ipython `%%R` can be passed a local converter (see new features above) by using `-c`. * Conversion rules were not applied when parsing and evaluating string as R with :class:`rpy2.robjects.R`. * Calling the constructor for :class:`rpy2.robjects.vectors.FactorVector` with an R factor is no longer making a copy, loosing the associated R attributes if any (fixes issue #299). * `rpy2` could crash when R was unable to dynamically load the C extension for one of its packages (noticed with issue #303). * :func:`rpy2.rinterface.is_initialized` is now a function. * :meth:`rpy2.robjects.R.__call__` is now calling R's `base::parse()` to parse the string rather the parser through R's C-API. The workaround let's us retrieve R's error message in case of failure (see issue #300) - changes from version 2.6.3: * Metaclass `RS4Auto_Type` facilitating the creation of Python classes from R S4 classes was not handling classes without methods (issue #301) - update to version 2.6.2: * Check that R >= 3.2 is used at build time (issue #291) * Conversion rules were not applied when parsing and evaluating string as R code with :class:`rpy2.robjects.R`. - update to version 2.6.1: * Because of their long names, the classes :class:`SignatureTranslatedAnonymousPackage`, :class:`SignatureTranslatedPackage`, and :class:`SignatureTranslatedFunction` in :mod:`rpy2.robjects.packages` have now the aliases :class:`STAP`, :class:`STP`, and :class:`STF` respectively. * Typo in function name emitting warnings at build time (issue #283) * The conversion of `TaggedList` instances is now handling the names of items in the list (issue #286) * Loading the `ipython` extension in the absence of `pandas` or `numpy` is now issuing a warning (issue #279) - update to version 2.6.0: * Report the existence during build time of a file `.Renviron`, or the definition of the environment variables `R_ENVIRON' or `R_ENVIRON_USER` with a warning. (issue #204) * Moved console writting callback to use `ptr_R_WriteConsoleEx` rather than `ptr_R_WriteConsole`. This allows callbacks for warnings and messages. `get/set_writeconsole` is now replaced by `get/set_writeconsole_regular` (regular output) and `get/set_writeconsole_warnerror` (warning and error). In order to conserve backward compatibility an alias for `get/set_writeconsole_regular` called `get/set_writeconsole` is provided. * Added callback for `ptr_R_ResetConsole`. * `pandas` :class:`Categorical` objects are automatically handled in the pandas converter. * The translation of R symbols into Python symbols used in `importr` and underlying classes and methods can be customized with a callback. The default translation turning `.` into `_` is `default_symbol_r2python`. * Translation of named arguments in R function is now sharing code with the translation of R symbols (see point above), providing a consistent way to perform translations. * Utility function `sequence_to_vector` in `robjects` to convert Python sequences (e.g., `list` or `tuple`) to R vector without having to specify the type (the type is inferred from the list). * `robjects.vectors` object have a property :attr:`NAvalue` that contains the `NA` value for the vector, allowing generic code on R vectors. For example, testing whether any vector contains `NA` can be written as `any(x is myvector.NAvalue for x in myvector)`. Making numpy /masked/ array is an other application. * Changes + The automatic name translation from R to Python used in `importr` is now slightly more complex. It will not only translate `.` to `_` but should a conflict arise from the existence in R of both the `.` and `_` versions the `.` version will be appended a `_` (in accordance with :pep:0008). The change was discussed in issue #274). + The ipython 'R magic' is now starting with a default conversion mode that is `pandas2ri` if it can find it, then `numpy2ri` if it can find it, and then the basic conversion. + R vectors are now typed at the C level (IntSexpVector, FloatSexpVector, ListSexpVector, etc...) whenever retrieving them from the embedded R with the low-level `rinterface`. This is facilitating dispatch on vector type (e.g., with `singledispatch` now used for the conversion system). * Bugs fixed + The evaluation of R code through R's C-level function `tryEval` caused console output whenever an error occurred. Moving to the seemingly experimental `tryEvalSilent` makes evaluations less verbose. + Multiple plots in one ipython cell (pull request #44) - changes from version 2.5.7: * "simplegeneric" was moved of ipython 4.0.0 (pull request #43) ------------------------------------------------------------------- Sun May 24 11:02:03 UTC 2015 - toddrme2178@gmail.com - Update to version 2.5.6 - Detection of the R version during setup on Win8 (issues #255 and #258) - Segmentation fault when converting :mod:`pandas` :class:`Series` with elements of type object (issue #264) - The default converter from Python (non-rpy2) objects to rinterface-level objects was producing robjects-level objects whenever the input was of type :class:`list` (discovered while fixing issue #264) - Implemented suggested fix for issue with unlinking files on Windows (issue #191) - Testing rpy2 in the absence of ipython no longer stops with an error (issue #266) - Update to version 2.5.5 - Crash (segfault) when querying an R object in an R environment triggers an error (symbol exists, but associated values resolves to an error - issue #251) - Change in the signature of `rcall` was not updated in the documentation (issue #259) - Minor update to the documentation (issue #257) ------------------------------------------------------------------- Tue Jan 13 14:19:36 UTC 2015 - toddrme2178@gmail.com - specfile: * update copyright year * README -> README.md - update to version 2.5.4: * Filter PNG files on size, preventing empty files causing trouble to be ipython notebook rendering of graphics later on (slight modification of the pull request #39) * Fix installation left unresolved with rpy2-2.5.3 (issue #248) * Possible segfault with Python 3.4 (issue #249) - changes to version 2.5.3: * 'setup.py' has 'install_requires' in addition to 'requires' in the hope to fix the missing dependency with Python 2 ('singledispatch' is required but not installed). * Extracting configuration information from should now work when R is emitting a warning (issue #247) * On OS X the library discovery step can yield nothing (see issue #246). A tentative fix is to issue a warning and keep moving. - changes to version 2.5.2: * String representation of 'robjects.R' (issue #238) * Check during 'build_ext' if unsupported version of R (pull request #32) * HTMl display of columns of factors in a DataFrame (issue #236) * HTML display of factors (issue #242) - changes to version 2.5.1: * Require singledispatch if Python 3.3 (issue #232) * Fixed bug when R spits out a warning when asked configuration information (issue #233) * Restored printing of compilation information when running 'setup.py' * Fixed installation issue on some systems (issue #234) * Workaround obscure failure message from unittest if Python < 3.4 and 'singledispatch' cannot be imported (issue #235) - changes to version 2.5.0: * Experimental alternative way to preserve R objects from garbage collection. This can be activated with 'rinterface.initr(r_preservehash=True)' (default is 'False'. * 'GGPlot' object getting a method 'save' mirroring R's 'ggplot2::ggsave()'. * The conversion system is now using generics/single dispatch. * New module 'rpy2.ipython.html' with HTML display for rpy2 objects * [Experimental] New function 'robjects.methods.rs4instance_factory' to type RS4 objects with more specificity. * The script 'setup.py' was rewritten for clarity and ease of maintenance. Now it only uses 'setuptools'. - changes to version 2.4.4: * Use 'input' rather than 'raw_input' in the default console callback with Python 3 (fixes issue #222) * Issues with conversions, pandas, and rmagic (fixes issue #218 and more) - changes to version 2.4.3: * 'geom_raster' was missing from 'rpy2.robjects.lib.ggplot2' (pull request #30) * Fixed issue with SVG rendering in ipython notebook (issue #217) * Regression with 'rx2()' introduced with new conversion (issue #219) * Fixed documentation (missing 'import') (issue #213) - Release 2.4.2 * Bugs fixed - Assigning an R `DataFrame` into an environment was failing if the conversion for Pandas was activated. (Issue #207) - Release 2.4.1 * Bugs fixed - :meth:`rpy2.ipython` fixed spurious output to notebook cells. - Release 2.4.0 * Changes - Conversion system slightly changed, with the optional conversions for :mod:`numpy` and :mod:`pandas` modified accordingly. The changes should only matter if using third-party conversion functions. - The Python 3 version is now a first class citizen. `2to3` is no longer used, and the code base is made directly compatible with Python. This lowers significantly the installation time with Python 3 (which matters when developping rpy2). - The default options to initialize R (`rpy2.rinterface.initoptions') are no longer `('rpy2', '--quiet', '--vanilla', '--no-save')` but now `('rpy2', '--quiet', '--no-save')`. - :class:`robjects.vectors.ListVector` can be instanciated from any objects with a method `items()` with the expectation that the method returns an iterable of (name, value) tuples, or even be an iterable of (name, value) tuples. * New features - For instances of :class:`rpy2.robjects.Function`, the `__doc__` is now a property fetching information about the parameters in the R signature. - Convenience function :func:`rpy2.robjects.packages.data` to extract the datasets in an R pacakges - :mod:`ipython`'s `rmagic` is now part of :mod:`rpy`. To use, `%load_ext rpy2.ipython` from within IPython. - new method :meth:`rpy2.rinterface.SexpEnvironment.keys`, returnings the names in the environment as a tuple of Python strings. - convenience class :class:`robjects.packages.InstalledPackages`, with a companion function :func:`robjects.packages.isinstalled`. - new class :class:`rinterface.SexpSymbol` to represent R symbols * Bugs fixed - :meth:`rpy2.rinterface.Sexp.do_slot` was crashing when the parameter was an empty string (PR #155) - Release 2.3.10 * Bugs fixed - `setup.py build` was broken when new R compiled with OpenMP (Issue #183) - Release 2.3.9 * Bugs fixed - Changes in pandas 0.13.0 broke the rpy2 conversion layer (Issue #173) ------------------------------------------------------------------- Sun Nov 24 15:51:43 UTC 2013 - p.drouand@gmail.com - Update to version 2.3.8 + Fix crash with R-3.0.2. Changes in R-3.0.2's C API coupled to a strange behaviour with R promises caused the problem. (PR #150) - Changes from version 2.3.7 + ggplot2's "guides" were missing + ggplot2's "theme_classic" was missing (PR #143) + ggplot2's "element_rect" was missing (PR #144) + :func:`rpy2.interactive.packages` was broken (PR #142) - Changes from version 2.3.6 + Several reports of segfault on OS X (since rpy2-2.3.1 - PR #109) + More fixes in converting `DataFrames` with dates from `pandas` - Remove redundant %clean section - Fix license; rpy2 is released under the MOZILLA PUBLIC LICENSE 1.1 and can be used under this one or under GNU General Public License version 2 or GNU Lesser General Public License version 2.1 - Add licenses files in package documentation ------------------------------------------------------------------- Mon Apr 22 16:35:07 UTC 2013 - toddrme2178@gmail.com - update to new version 2.3.5 - update to new URL - add buildrequires: R-base, which is needed for openSUSE:Factory ------------------------------------------------------------------- Fri May 18 11:17:28 UTC 2012 - toddrme2178@gmail.com - Add python 3 package - Clean up spec file formatting ------------------------------------------------------------------- Sat Apr 14 04:30:46 UTC 2012 - badshah400@gmail.com - Update BuildRequires in keeping with lapack package naming changes. ------------------------------------------------------------------- Sat Feb 25 22:24:26 UTC 2012 - scorot@free.fr - fix build for SLE-11 ------------------------------------------------------------------- Fri Jan 6 17:28:34 UTC 2012 - toddrme2178@gmail.com - Clean up spec file ------------------------------------------------------------------- Fri Dec 16 09:20:06 UTC 2011 - otto.dassau@gmx.de - update to version 2.2.4 - add readline as BuildRequires ------------------------------------------------------------------- Tue May 02 06:59:34 UTC 2011 - dassau@gbd-consult.de - update new version 2.1.9 ------------------------------------------------------------------- Thu Nov 04 12:59:34 UTC 2010 - dassau@gbd-consult.de - update new version 2.1.7 ------------------------------------------------------------------- Mon Jul 20 18:59:34 UTC 2009 - dassau@gbd-consult.de - added to opensuse Build Service ------------------------------------------------------------------- Mon Jun 15 10:39:34 UTC 2009 - tpg@mandriva.org - update new version
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