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File python-yt.changes of Package python-yt
------------------------------------------------------------------- Sat Nov 23 11:04:14 UTC 2024 - Dirk Müller <dmueller@suse.com> - update to yt-4.4.0: * the frontend previously known as boxlib was renamed to AMReX * this release contains a brand new frontend for Parthenon datasets. * off-axis projections are now supported * improved convergence with grid resolution * improved mass conservation * fixed a critical bug where column densities estimates were incorrect by a factor x3 calculation for Ramses, by @cphyc * Change in the way cooling tables are used. If "self- shielding" is detected from the namelist or is set by the user with `ds=yt.load("output_12345", self_shielding=True)`, the hydrogen number density used to obtain cooling, heating and $$\mu$$ from the cooling tables are multiplied by an exponential prefactor, consistently with what RAMSES is doing internally. This will change the values of the cooling and heating rates, as well as $$\mu$$ and temperature at high- densities (above 0.01 mp/cm³). ------------------------------------------------------------------- Thu Jul 18 17:12:30 UTC 2024 - Ben Greiner <code@bnavigator.de> - Revert restriction. Numpy 2 is supported since 4.3.1 ------------------------------------------------------------------- Wed Jul 17 05:41:40 UTC 2024 - Steve Kowalik <steven.kowalik@suse.com> - Restrict numpy to < 2 for now. ------------------------------------------------------------------- Thu Jul 4 05:28:54 UTC 2024 - Steve Kowalik <steven.kowalik@suse.com> - Update to 4.3.1: * Fix broken urllib imports * Make annotate_sphere and annotate_arrow safe when run after plot invalidation * Fix an incompatibility with unyt 3.0 (amu_cgs doesn't exist as a physical constant anymore) * Handle deprecation warnings from numpy 2.0.0dev0 (np.row_stack -> np.vstack and np.in1d -> np.isin) * Avoid a deprecation warning in yt.load_sample on Python 3.12 * Switch to field tuples for default fields in particle_trajectories * Enforce Figure dpi in _show_mpl * Fix bug where race condition results in incorrect fields categorization when computing particle_trajectories * Use the validated center for YTCuttingPlane set_field_parameter * Avoid usage of deprecated numpy.core namespace (numpy 2 compat) * Fix geographic coordinate conversions * Update xarray integration test to use non-deprecated API * Enzo testing framework - ignore units for ShockTube tests * Explicitly set minimum Python to 3.9.2 * Ditch np.int_t, removed in numpy 2's C API (use np.int64_t instead) * Migrate module-level setup/teardown functions to pytest - Drop patch yt-pr4727-unpin-unyt.patch, included upstream. - Remove upper bound on numpy. ------------------------------------------------------------------- Mon Apr 8 10:30:47 UTC 2024 - Dirk Müller <dmueller@suse.com> - add sle15_python_module_pythons ------------------------------------------------------------------- Fri Mar 8 16:33:58 UTC 2024 - Ben Greiner <code@bnavigator.de> - Skip python39: no longer supported since ipython 8.19 ------------------------------------------------------------------- Wed Feb 14 20:49:08 UTC 2024 - Ben Greiner <code@bnavigator.de> - Update to 4.3.0 * This is the first version with support to CPython 3.12. * We've resolved all remaining compatibility issues with Cython 3. ## New features * #4449 Add support for symlog colorbars with arbitrary bases, by @neutrinoceros (issue #4448) * #4455 Add support for passing field keys for colors and linewidth in streamline plot annotations, by @neutrinoceros (issue #4454) * #4527 Add QuadrilinearFieldInterpolator, by @brittonsmith * #4553 Store basic software info in png metadata, by @Xarthisius * #4556 Add option to include min/max limits on the color field for export_sketchfab, by @evenoconnor * #4658 Allow annotate_grids to force cmap to respect max_levels, by @zingale * #4642 + #4662 Make unused pixels actually transparent in all imshow-based 2D visualisations, by @neutrinoceros (issue #4639 by @vdbma) * #4481 Add the ability to set the transfer function label fontsize, by @zingale ## Frontends * #4562 Athena++ stretched grids support, by @jzuhone (issues #1585 by @Yurlungur, #3389 by @smressle, #3619 by @neutrinoceros and #4557 by @matthewturk) * #4572 Species handling for the stream frontend, by @jzuhone * #4470 + #4605 Update GIZMO frontend to handle newer GIZMO versions, by @mtryan83 * #4424 Support for sinks in csv format for RAMSES frontend, by @Lenoble-lab - Release 4.2.x * This is the second feature release in the yt 4.x series. It also comes with some important bug fixes. * Some deprecations are now expired, some minor backward incompatibilities are expected. Anything broken on purpose in this version should correspond to a warning in yt 4.1.x, anything beyond that should be considered a regression; please report any unexpected breaking change. ## Highlights * Multiple improvements (detection, validation, uage) for EWAH files (#4307, #4426) * yt can now be installed with frontend specific optional dependencies with pip (#4272) * Plugin frontends can now seamlessly hook into yt.load() (#4285) * Off-axis projections are now supported for non-SPH particle (#4440) ## New features * #4175 Improvements to field_to_include specifications in create_firefly_object, by @mtryan83 (issue #4174) * #4198 + #4249 Automatically find EWAH files with increased index_order2, by @jzuhone (issue #3487 by @chummels) * #4205 Add upward directory lookup for local configuration file, by @neutrinoceros (issue #3953) * #4222 Two new features for writing FITS images, by @jzuhone * #4272 Add support for installing yt with cherry-picked, frontend specific optional dependencies with pip, by @neutrinoceros (issue #4272) * #4285 Automatically load external frontends in yt.load(), by @Xarthisius * #4307 Allow to store multiple bitmap indices in the ewah-sidecar, by @Xarthisius * #4343 Add reusable matplotlib stylesheet, by @neutrinoceros (issue #4342) * #4363 Add basename for loaders, by @jisuoqing * #4397 Allow hint keyword for yt.load to select superclasses, by @yut23 * #4410 Export standard deviation to pandas DataFrames and AstroPy QTables, by @jzuhone * #4446 Whitelist the SPH star_formation_rate field, by @jzuhone * #4440 Off-axis (non-SPH) particle projections, by @jzuhone - Add yt-pr4727-unpin-unyt.patch gh#yt-project/yt#4727 - Enable multibuild test flavor - Add yt-ignore-pytestdepr.patch ------------------------------------------------------------------- Tue Oct 3 13:06:52 UTC 2023 - Ondřej Súkup <mimi.vx@gmail.com> - Fix dependency on Cpython ------------------------------------------------------------------- Fri Feb 10 13:06:52 UTC 2023 - Dirk Müller <dmueller@suse.com> - update to 4.1.4: * Fix calling PlotContainer.set_font to set font color, * Fix a regression in yt.load where '$HOME' and '~' path weren't expanded * (partial) Fix issue #4286 SDF frontend breaks load() if target file lacks read permission * (FLASH) Fix domain edges padding in reduced dimensions * (partial) Delay expensive imports * Cleanup calls to private methods _setup_plots in cookbook ------------------------------------------------------------------- Mon Jan 2 14:12:44 UTC 2023 - Matej Cepl <mcepl@suse.com> - Upgrade to 4.1.3: This is the third bugfix release in the yt 4.1.x series. It contains fixes to bugs discovered since the 4.1.2 release. Most importantly, it reverts a unstable patch that was accidentally included in yt 4.1.2 (#4198). EWAH files should now behave as in yt 4.1.1, and we're aiming at re-releasing the new behaviour (with fixes) in yt 4.2.0 - Bug fixes - #4231 Fix pixel size calculation for density option in particle projection plots and FITS images, by @jzuhone - #4239 Fix a broken docs example, by @neutrinoceros - Build and testing - #4247 ignore a deprecation warning triggered from cartopy, by @neutrinoceros - #4250 Revert "Backport PR #4198 on branch yt-4.1.x (Automatically find EWAH files with increased index_order2)", by @neutrinoceros - #4258 on branch yt-4.1.x, by @neutrinoceros - There are no new features or deprecations in this version, all users are encouraged to upgrade. ------------------------------------------------------------------- Sat Dec 3 09:21:23 UTC 2022 - Matej Cepl <mcepl@suse.com> DO NOT SUBMIT TO FACTORY, CFLAGS includes "-freport-bug" - Upgrade to 4.1.2: It contains fixes to bugs discovered since the 4.1.1 release. There are no new features or deprecations in this version, all users are encouraged to upgrade. - Upgrade to 4.1.1: It contains a couple of critical fixes to bugs discovered since the 4.1.0 release. Most importantly, it resolves a memory leak that was affecting octree-based frontends (RAMSES and ART). There are no new features or deprecations in this version, all users are encouraged to upgrade. - Upgrade to 4.1.0: It contains about a year of work by many contributors, with many new features and improvements to the code base. It is also the first release to officially supported Python 3.11. Some deprecations from yt < 4 are now expired, some minor backwards incompatibilities are expected. Anything broken on purpose in this version should correspond to a warning in yt 4.0.x, anything beyond that should be considered a regression; please report any unexpected breaking change. Complete releases changelog is available at https://github.com/yt-project/yt/releases. ------------------------------------------------------------------- Fri Jul 17 12:57:19 UTC 2020 - Marketa Calabkova <mcalabkova@suse.com> - update to version 3.6.1 * The angular momentum has been reversed compared to previous versions of yt. See `PR 2043 <https://github.com/yt-project/yt/pull/2043>`__. * New frontend support for the code AMRVAC. Many thanks to Clement Robert and Niels Claes who were major contributors to this initiative. Relevant PRs include: * Support for the AdaptaHOP halo finder code `PR 2385 <https://github.com/yt*project/yt/pull/2385>`__. * yt now supports geographic transforms and projections of data with cartopy with support from `PR 1966 <https://github.com/yt*project/yt/pull/1966>`__. * annotations used to work for only a single point, they now work for multiple points on a plot, see `PR 2122 <https://github.com/yt*project/yt/pull/2122>`__. * cosmology calculations now have support for the relativistic energy density of the universe, see `PR 1714 <https://github.com/yt*project/yt/pull/1714>`__. This feature is accessible to cosmology datasets and was added to the Enzo frontend. * the eps writer now allows for arrow rotation. this is accessible with the ``rotate`` kwarg in the ``arrow`` function. See `PR 2151 <https://github.com/yt*project/yt/pull/2151>`__. * allow for dynamic load balancing with parallel loading of timeseries data using the ``dynamic`` kwarg. `PR 2149 <https://github.com/yt*project/yt/pull/2149>`__. * show/hide colorbar and show/hide axes are now available for ``ProfilePlot`` s. These functions were also moved from the PlotWindow to the PlotContainer class. `PR 2169 <https://github.com/yt*project/yt/pull/2169>`__. * add support for ipywidgets with an ``__ipython_display__`` method on the FieldTypeContainer. Field variables, source, and the field array can be viewed with this widget. See PRs `PR 1844 <https://github.com/yt*project/yt/pull/1844>`__ and `PR 1848 <https://github.com/yt*project/yt/pull/1848>`__, or try ``display(ds.fields)`` in a Jupyter notebook. * cut regions can now be made with ``exclude_`` and ``include_`` on a number of objects, including above and below values, inside or outside regions, equal values, or nans. See `PR 1964 <https://github.com/yt*project/yt/pull/1964>`__ and supporting documentation fix at `PR 2262 <https://github.com/yt*project/yt/pull/2262>`__. * previously aliased fluid vector fields in curvilinear geometries were not converted to curvilinear coordinates, this was addressed in `PR 2105 <https://github.com/yt*project/yt/pull/2105>`__. * 2d polar and 3d cylindrical geometries now support annotate_quivers, streamlines, line integral convolutions, see `PR 2105 <https://github.com/yt*project/yt/pull/2105>`__. * add support for exporting data to firefly `PR 2190 <https://github.com/yt-project/yt/pull/2190>`__. * gradient fields are now supported in curvilinear geometries. See `PR 2483 <https://github.com/yt*project/yt/pull/2483>`__. * plotwindow colorbars now utilize mathtext in their labels, from `PR 2516 <https://github.com/yt*project/yt/pull/2516>`__. * raise deprecation warning when using ``mylog.warn``. Instead use ``mylog.warning``. See `PR 2285 <https://github.com/yt*project/yt/pull/2285>`__. * extend support of the ``marker``, ``text``, ``line`` and ``sphere`` annotation callbacks to polar geometries `PR 2466 <https://github.com/yt*project/yt/pull/2466>`__. * Support MHD in the GAMER frontend `PR 2306 <https://github.com/yt-project/yt/pull/2306>`__. * Export data container and profile fields to AstroPy QTables and pandas DataFrames `PR 2418 <https://github.com/yt*project/yt/pull/2418>`__. * Add turbo colormap, a colorblind safe version of jet. See `PR 2339 <https://github.com/yt*project/yt/pull/2339>`__. * Enable exporting regular grids (i.e., covering grids, arbitrary grids and smoothed grids) to ``xarray`` `PR 2294 <https://github.com/yt*project/yt/pull/2294>`__. * add automatic loading of ``namelist.txt``, which contains the parameter file RAMSES uses to produce output `PR 2347 <https://github.com/yt*project/yt/pull/2347>`__. * adds support for a nearest neighbor value field, accessible with the ``add_nearest_neighbor_value_field`` function for particle fields. See `PR 2301 <https://github.com/yt*project/yt/pull/2301>`__. * speed up mesh deposition (uses caching) `PR 2136 <https://github.com/yt-project/yt/pull/2136>`__. * speed up ghost zone generation. `PR 2403 <https://github.com/yt-project/yt/pull/2403>`__. * ensure that a series dataset has kwargs passed down to data objects `PR 2366 <https://github.com/yt-project/yt/pull/2366>`__. - skip python36 because of numpy ------------------------------------------------------------------- Fri May 15 12:52:19 UTC 2020 - Petr Gajdos <pgajdos@suse.com> - %python3_only -> %python_alternative ------------------------------------------------------------------- Wed Mar 13 11:13:23 UTC 2019 - Tomáš Chvátal <tchvatal@suse.com> - Update to 3.5.1: * no upstream changelog ------------------------------------------------------------------- Tue Jan 8 19:36:17 UTC 2019 - Todd R <toddrme2178@gmail.com> - initial version
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