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File clustalx.spec of Package clustalx
# # spec file for package clustalx # # Copyright (c) 2010 SUSE LINUX Products GmbH, Nuernberg, Germany. # # All modifications and additions to the file contributed by third parties # remain the property of their copyright owners, unless otherwise agreed # upon. The license for this file, and modifications and additions to the # file, is the same license as for the pristine package itself (unless the # license for the pristine package is not an Open Source License, in which # case the license is the MIT License). An "Open Source License" is a # license that conforms to the Open Source Definition (Version 1.9) # published by the Open Source Initiative. # Please submit bugfixes or comments via http://bugs.opensuse.org/ # # norootforbuild Name: clustalx Summary: Multiple Sequence Alignment Program Version: 2.1 Release: 1 License: LGPL Group: Productivity/Scientific/Other BuildRequires: gcc gcc-c++ make libqt4-devel >= 4.3 Source: %name-%version.tar.gz BuildRoot: %{_tmppath}/%{name}-%{version}-build URL: http://www.clustal.org/ %description CLUSTAL W and CLUSTAL X Multiple Sequence Alignment Programs For details and citation purposes see paper "Clustal W and Clustal X version 2.0", Larkin M., et al. Bioinformatics 2007 23(21):2947-2948 http://bioinformatics.oxfordjournals.org/cgi/content/full/23/21/2947 %prep %setup -q #fix incorrect line ending sed -i 's/\r//' clustalx.hlp %build qmake make %{?_smp_mflags} cat > clustalx2 <<'EOF' #!/bin/sh ########################################################################### # Version: 1.0 # Code from the clustalx installer script # Path to the clustal installation directory export CLU_INSTALL_DIR=%{_libdir}/clustalx BINARY=clustalx ########################################################################### PROG=`basename $0` # Debugging #echo CLU_INSTALL_DIR=$CLU_INSTALL_DIR 1>&2 #echo BINARY=$BINARY 1>&2 # Is there an executable binary file? binary=$CLU_INSTALL_DIR/$BINARY if [ ! -f $binary ]; then echo "$PROG: Can't find executable '$binary'" exit 1 fi if [ ! -x $binary ]; then echo "$PROG: Binary '$binary' is not executable" exit 1 fi # Exec the child over this one exec $binary $* ########################################################################### EOF %install mkdir -p %{buildroot}/%{_bindir} mkdir -p %{buildroot}/%{_libdir}/%{name} mkdir -p %{buildroot}/%{_docdir}/%{name} install -m 644 *.xml %{buildroot}/%{_libdir}/%{name}/ install -m 755 clustalx %{buildroot}/%{_libdir}/%{name}/clustalx install -m 755 clustalx2 %{buildroot}/%{_bindir}/clustalx2 install -m 644 clustalx.hlp %{buildroot}/%{_docdir}/%{name}/clustalx.hlp ln -s %{_docdir}/%{name}/clustalx.hlp %{buildroot}/%{_libdir}/clustalx/clustalx.hlp %clean rm -rf %{buildroot} %files %defattr(-,root,root) %doc COPYING COPYING.LESSER README clustalx.hlp %{_libdir}/clustalx %{_bindir}/clustalx2 %changelog
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