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File hmmer.spec of Package hmmer3

#
# spec file for package hmmer
#
# Copyright (c) 2022 SUSE LLC
#
# All modifications and additions to the file contributed by third parties
# remain the property of their copyright owners, unless otherwise agreed
# upon. The license for this file, and modifications and additions to the
# file, is the same license as for the pristine package itself (unless the
# license for the pristine package is not an Open Source License, in which
# case the license is the MIT License). An "Open Source License" is a
# license that conforms to the Open Source Definition (Version 1.9)
# published by the Open Source Initiative.

# Please submit bugfixes or comments via https://bugs.opensuse.org/
#

Name:           hmmer
Version:        3.3.2
Release:        0
Summary:        Sequence homology search software
License:        BSD-3-Clause
Group:          Productivity/Scientific/Other
URL:            http://hmmer.org
Source:         http://eddylab.org/software/hmmer/hmmer-%{version}.tar.gz
BuildRequires:  gcc >= 4.8
Provides:       %{name}-devel = %{version}
Obsoletes:      %{name}-devel < %{version}
ExclusiveArch:  ppc64 x86_64 %{ix86}

%description
HMMER is used for searching sequence databases for homologs of protein sequences,
and for making protein sequence alignments. It implements methods using
probabilistic models called “profile hidden Markov models” (profile HMMs).

Compared to BLAST, FASTA, and other sequence alignment and database search tools
based on older scoring methodology, HMMER aims to be significantly more accurate
and more able to detect remote homologs because of the strength of its underlying
 mathematical models. In the past, this strength came at significant computational
 expense, but in the new HMMER3 project, HMMER is now essentially as fast as BLAST.

%prep
%setup -q

%build
%configure
%make_build

%install
%make_install

%files
%license LICENSE
%doc README.md RELEASE-%{version}.md Userguide.pdf
%doc tutorial/*
%{_bindir}/alimask
%{_bindir}/hmmalign
%{_bindir}/hmmbuild
%{_bindir}/hmmconvert
%{_bindir}/hmmemit
%{_bindir}/hmmfetch
%{_bindir}/hmmlogo
%{_bindir}/hmmpgmd
%{_bindir}/hmmpgmd_shard
%{_bindir}/hmmpress
%{_bindir}/hmmscan
%{_bindir}/hmmsearch
%{_bindir}/hmmsim
%{_bindir}/hmmstat
%{_bindir}/jackhmmer
%{_bindir}/makehmmerdb
%{_bindir}/nhmmer
%{_bindir}/nhmmscan
%{_bindir}/phmmer
%{_mandir}/man1/alimask.1%{?ext_man}
%{_mandir}/man1/hmmalign.1%{?ext_man}
%{_mandir}/man1/hmmbuild.1%{?ext_man}
%{_mandir}/man1/hmmc2.1%{?ext_man}
%{_mandir}/man1/hmmconvert.1%{?ext_man}
%{_mandir}/man1/hmmemit.1%{?ext_man}
%{_mandir}/man1/hmmer.1%{?ext_man}
%{_mandir}/man1/hmmfetch.1%{?ext_man}
%{_mandir}/man1/hmmlogo.1%{?ext_man}
%{_mandir}/man1/hmmpgmd.1%{?ext_man}
%{_mandir}/man1/hmmpgmd_shard.1%{?ext_man}
%{_mandir}/man1/hmmpress.1%{?ext_man}
%{_mandir}/man1/hmmscan.1%{?ext_man}
%{_mandir}/man1/hmmsearch.1%{?ext_man}
%{_mandir}/man1/hmmsim.1%{?ext_man}
%{_mandir}/man1/hmmstat.1%{?ext_man}
%{_mandir}/man1/jackhmmer.1%{?ext_man}
%{_mandir}/man1/makehmmerdb.1%{?ext_man}
%{_mandir}/man1/nhmmer.1%{?ext_man}
%{_mandir}/man1/nhmmscan.1%{?ext_man}
%{_mandir}/man1/phmmer.1%{?ext_man}

%changelog

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File hmmer.spec of Package hmmer3

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