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ncbi-vdb
ncbi-vdb.spec
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File ncbi-vdb.spec of Package ncbi-vdb
# # spec file for package ncbi-vdb # # Copyright (c) 2023 SUSE LLC # # All modifications and additions to the file contributed by third parties # remain the property of their copyright owners, unless otherwise agreed # upon. The license for this file, and modifications and additions to the # file, is the same license as for the pristine package itself (unless the # license for the pristine package is not an Open Source License, in which # case the license is the MIT License). An "Open Source License" is a # license that conforms to the Open Source Definition (Version 1.9) # published by the Open Source Initiative. # Please submit bugfixes or comments via https://bugs.opensuse.org/ # Name: ncbi-vdb Version: 3.0.2 Release: 0 Summary: VDB database engine for SRA License: SUSE-Public-Domain Group: Productivity/Scientific/Other URL: https://github.com/ncbi/ncbi-vdb Source: https://github.com/ncbi/ncbi-vdb/archive/refs/tags/%{version}.tar.gz#/ncbi-vdb-%{version}.tar.gz BuildRequires: chrpath BuildRequires: cmake BuildRequires: fdupes BuildRequires: file-devel BuildRequires: gcc-c++ BuildRequires: hdf5-devel BuildRequires: libbz2-devel BuildRequires: libxml2-devel BuildRequires: libzstd-devel BuildRequires: mbedtls-devel ExclusiveArch: x86_64 aarch64 %{arm} %description The (US) National Center for Biotechnology Information (NCBI)'s Virtual/Vertical Database (VDB) is a highly compressed column-oriented data warehousing technology developed initially to address the needs of the Sequence Read Archive (SRA). %package devel Summary: Development files for ncbi-vdb Group: Development/Languages/C and C++ Requires: libbz2-devel Requires: libncbi-vdb = %{version} Requires: libxml2-devel Requires: libzstd-devel Requires: mbedtls-devel %description devel Header files for ncbi-vdb development. %package -n libncbi-vdb Summary: NCBI vdb shared libraries Group: System/Libraries %description -n libncbi-vdb Header files for ncbi-vdb development. %prep %autosetup -p1 # Unvendor system libraries sed -i -e '/add_subdirectory(ext).*/ d' -e 's/ ext / /' libs/CMakeLists.txt test/CMakeLists.txt sed -i -e '/mbed.*/ d' -e '/bz2/ d' -e '/zstd/ d' -e '/\bz\b/ d' libs/ncbi-vdb/CMakeLists.txt sed -i -e 's/;dl;/;dl;bz2;zstd;z;mbedtls;mbedcrypto;mbedx509;/' libs/ncbi-vdb/CMakeLists.posix.txt sed -i -e '/COMMON_LIBS_/ s/ncbi-.*vdb/\0-shared/' test/CMakeLists.txt sed -i -e 's/vdb_mbed/mbed/g' -e 's/vdb_ ## func_name/func_name/' libs/{krypto,kns,cloud}/*.c sed -i -e '/#include/ s@ext/@@' libs/*/*.c rm -Rf libs/ext rm -Rf interfaces/ext # Disable installation of static libraries find . -iname \*CMakeLists\*.txt -print -exec sed -i '/ExportStatic/ s/ true / false /' '{}' \+ # Fixup arm64/aarch64 confusion cp -R interfaces/cc/gcc/arm64 interfaces/cc/gcc/aarch64 %build export CFLAGS="-DH5_USE_18_API %{optflags}" %cmake \ -DINST_BINDIR=%{_bindir} \ -DINST_LIBDIR=%{_libdir} \ -DINST_INCDIR=%{_includedir}/ncbi-vdb/interfaces \ -DLIBS_ONLY:BOOL=ON \ %{nil} %cmake_build %install %cmake_install rm -Rf %{buildroot}/%{_includedir}/ncbi-vdb/interfaces/os/sun rm -Rf %{buildroot}/%{_includedir}/ncbi-vdb/interfaces/cc/vc++ rm -Rf %{buildroot}/%{_includedir}/ncbi-vdb/interfaces/cc/cc %fdupes %{buildroot}/%{_includedir} chrpath --delete %{buildroot}/%{_libdir}/lib*.so.* %post -n libncbi-vdb -p /sbin/ldconfig %postun -n libncbi-vdb -p /sbin/ldconfig %files -n libncbi-vdb %{_libdir}/*.so.* %files devel %{_libdir}/*.so %{_includedir}/ncbi-vdb %license LICENSE %doc README.md CHANGES.md %changelog
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