File fix-isnan-undeclared.patch of Package openms

Overview Repositories Revisions Requests Users Attributes Meta

File fix-isnan-undeclared.patch of Package openms

From 9264cfd89cd55dd58898f29b0ea83e1235e43490 Mon Sep 17 00:00:00 2001
From: amit0617 <71893015+Amit0617@users.noreply.github.com>
Date: Sat, 12 Mar 2022 22:20:50 +0530
Subject: [PATCH 1/2] fix: 5864, isnan error

---
 src/openms/source/QC/MQEvidenceExporter.cpp | 10 +++++-----
 1 file changed, 5 insertions(+), 5 deletions(-)

diff --git a/src/openms/source/QC/MQEvidenceExporter.cpp b/src/openms/source/QC/MQEvidenceExporter.cpp
index f7a970908ec..6b85c71f6e3 100644
--- a/src/openms/source/QC/MQEvidenceExporter.cpp
+++ b/src/openms/source/QC/MQEvidenceExporter.cpp
@@ -41,10 +41,10 @@
 #include <OpenMS/SYSTEM/File.h>
 
 #include <QtCore/QDir>
-#include <boost/math/special_functions/fpclassify.hpp> // isnan
+#include <cmath> // isnan
 #include <fstream>
 
-#include <boost/math/special_functions/fpclassify.hpp> // isnan
+#include <cmath> // isnan
 #include <fstream>
 
 using namespace OpenMS;
@@ -315,7 +315,7 @@ void MQEvidence::exportRowFromFeature_(
   const double& uncalibrated_mz_error_ppm = ptr_best_hit->getMetaValue("uncalibrated_mz_error_ppm", NAN);
   const double& calibrated_mz_error_ppm = ptr_best_hit->getMetaValue("calibrated_mz_error_ppm", NAN);
 
-  if (isnan(uncalibrated_mz_error_ppm) && isnan(calibrated_mz_error_ppm))
+  if (std::isnan(uncalibrated_mz_error_ppm) && std::isnan(calibrated_mz_error_ppm))
   {
     file_ << "NA" << "\t"; // Mass error [ppm]
     file_ << "NA" << "\t"; // Uncalibrated Mass error [ppm]
@@ -324,7 +324,7 @@ void MQEvidence::exportRowFromFeature_(
     file_ << "NA" << "\t"; // Uncalibrated - Calibrated m/z [ppm]
     file_ << "NA" << "\t"; // Uncalibrated - Calibrated m/z [mDa]
   }
-  else if (isnan(calibrated_mz_error_ppm))
+  else if (std::isnan(calibrated_mz_error_ppm))
     {
       file_ << "NA" << "\t"; // Mass error [ppm]
       file_ << uncalibrated_mz_error_ppm << "\t"; // Uncalibrated Mass error [ppm]
@@ -333,7 +333,7 @@ void MQEvidence::exportRowFromFeature_(
       file_ << "NA" << "\t"; // Uncalibrated - Calibrated m/z [ppm]
       file_ << "NA" << "\t"; // Uncalibrated - Calibrated m/z [mDa]
     }
-    else if (isnan(uncalibrated_mz_error_ppm))
+    else if (std::isnan(uncalibrated_mz_error_ppm))
       {
         file_ << calibrated_mz_error_ppm << "\t"; // Mass error [ppm]
         file_ << "NA" << "\t"; // Uncalibrated Mass error [ppm]

From 8bd42e7d799e4c1f8c0dfb1d79c60254384a17fd Mon Sep 17 00:00:00 2001
From: AMIT KUMAR MISHRA <71893015+Amit0617@users.noreply.github.com>
Date: Mon, 14 Mar 2022 12:45:00 +0530
Subject: [PATCH 2/2] Update MQEvidenceExporter.cpp

removed include duplicates
---
 src/openms/source/QC/MQEvidenceExporter.cpp | 2 --
 1 file changed, 2 deletions(-)

diff --git a/src/openms/source/QC/MQEvidenceExporter.cpp b/src/openms/source/QC/MQEvidenceExporter.cpp
index 6b85c71f6e3..c3889026409 100644
--- a/src/openms/source/QC/MQEvidenceExporter.cpp
+++ b/src/openms/source/QC/MQEvidenceExporter.cpp
@@ -44,8 +44,6 @@
 #include <cmath> // isnan
 #include <fstream>
 
-#include <cmath> // isnan
-#include <fstream>
 
 using namespace OpenMS;

Places

File fix-isnan-undeclared.patch of Package openms

Places