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File stacks.spec of Package stacks
# # spec file for package stacks # # Copyright (c) 2018 SUSE LINUX GmbH, Nuernberg, Germany. # # All modifications and additions to the file contributed by third parties # remain the property of their copyright owners, unless otherwise agreed # upon. The license for this file, and modifications and additions to the # file, is the same license as for the pristine package itself (unless the # license for the pristine package is not an Open Source License, in which # case the license is the MIT License). An "Open Source License" is a # license that conforms to the Open Source Definition (Version 1.9) # published by the Open Source Initiative. # Please submit bugfixes or comments via http://bugs.opensuse.org/ # Name: stacks Version: 2.62 Release: 0 Summary: Pipeline to analyze restriction enzyme-based data License: GPL-3.0-only Group: Productivity/Scientific/Other URL: http://catchenlab.life.illinois.edu/stacks/ Source: http://catchenlab.life.illinois.edu/stacks/source/stacks-%{version}.tar.gz BuildRequires: gcc-c++ BuildRequires: perl-DBD-mysql BuildRequires: python BuildRequires: sparsehash-devel BuildRequires: zlib-devel Requires: perl Requires: python %description Stacks is a software pipeline for building loci from short-read sequences, such as those generated on the Illumina platform. Stacks was developed to work with restriction enzyme-based data, such as RAD-seq, for the purpose of building genetic maps and conducting population genomics and phylogeography. %prep %setup -q %build %configure make %{?_smp_mflags} %install %make_install # CONVERT env HASHBANGS TO USE DIRECT EXECUTABLE perlbin=`which perl` sed -i "s:/usr/bin/env perl:${perlbin}:" %{buildroot}/%{_bindir}/*.pl pybin=`which python` sed -i "s:/usr/bin/env python:${pybin}:" %{buildroot}/%{_bindir}/*.py %files %license LICENSE %doc README ChangeLog %{_bindir}/* %{_datadir}/stacks/ %{_datadir}/stacks/php/ %{_datadir}/stacks/php/* %{_datadir}/stacks/sql/ %{_datadir}/stacks/sql/* %changelog
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