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File python-pandas.spec of Package python-pandas
# # spec file for package python-pandas # # Copyright (c) 2024 SUSE LLC # # All modifications and additions to the file contributed by third parties # remain the property of their copyright owners, unless otherwise agreed # upon. The license for this file, and modifications and additions to the # file, is the same license as for the pristine package itself (unless the # license for the pristine package is not an Open Source License, in which # case the license is the MIT License). An "Open Source License" is a # license that conforms to the Open Source Definition (Version 1.9) # published by the Open Source Initiative. # Please submit bugfixes or comments via https://bugs.opensuse.org/ # %global flavor @BUILD_FLAVOR@%{nil} %{?sle15_python_module_pythons} %if "%{flavor}" == "" %define psuffix %{nil} %bcond_with test %else %define psuffix -%{flavor} %bcond_without test %if "%{flavor}" != "test-py310" %define skip_python310 1 %endif %if "%{flavor}" != "test-py311" %define skip_python311 1 %endif %if "%{flavor}" != "test-py312" %define skip_python312 1 %endif %if "%{flavor}" != "test-py313" %define skip_python313 1 %endif # Skip empty buildsets, last one is for sle15_python_module_pythons %if "%{shrink:%{pythons}}" == "" || ("%pythons" == "python311" && 0%{?skip_python311}) ExclusiveArch: donotbuild %define python_module() %flavor-not-enabled-in-buildset-for-suse-%{?suse_version} %endif %endif # Only test the core functionality in Ring1 (Lettered Staging) %bcond_with ringdisabled # s3fs not available %bcond_with aws # pandas-gbq not available %bcond_with gcp # xlsb not available %bcond_with xslb %bcond_with consortium_standard %bcond_with calamine %bcond_with adbc # depend/not depend on python-pyarrow and apache-arrow [bsc#1218592] %bcond_without pyarrow %if %{suse_version} <= 1500 # requires __has_builtin with keywords %define gccver 13 %endif Name: python-pandas%{psuffix} # Set version through _service Version: 2.2.3 Release: 0 Summary: Python data structures for data analysis, time series, and statistics License: BSD-3-Clause URL: https://pandas.pydata.org/ # SourceRepository: https://github.com/pandas-dev/pandas # Must be created by cloning through `osc service runall`: gh#pandas-dev/pandas#54903, gh#pandas-dev/pandas#54907 Source0: pandas-%{version}.tar.gz # PATCH-FIX-UPSTREAM gh#pandas-dev/pandas#1044cf44 Patch0: tests-nomkl.patch # PATCH-FIX-UPSTREAM tiny part of gh#pandas-dev/pandas#4f743f98 Patch1: tests-wasm.patch %if !%{with test} BuildRequires: %{python_module Cython >= 3.0.5} BuildRequires: %{python_module devel >= 3.9} BuildRequires: %{python_module meson-python >= 0.13.1} BuildRequires: %{python_module numpy-devel >= 1.26} BuildRequires: %{python_module pip} BuildRequires: %{python_module versioneer-toml} BuildRequires: %{python_module wheel} BuildRequires: fdupes BuildRequires: gcc%{?gccver}-c++ BuildRequires: git-core BuildRequires: meson >= 1.2.1 %endif BuildRequires: python-rpm-macros Requires: python-python-dateutil >= 2.8.2 Requires: python-pytz >= 2020.1 Requires: timezone >= 2022a Obsoletes: python-pandas-doc < %{version} Provides: python-pandas-doc = %{version} %if 0%{python_version_nodots} < 311 Requires: python-numpy >= 1.22.4 %else %if 0%{python_version_nodots} == 311 Requires: python-numpy >= 1.23.2 %else Requires: python-numpy >= 1.26 %endif %endif # SECTION extras Recommends: python-pandas-performance Recommends: python-pandas-pyarrow Suggests: python-pandas-all Suggests: python-pandas-clipboard Suggests: python-pandas-compression Suggests: python-pandas-computation Suggests: python-pandas-excel Suggests: python-pandas-fss Suggests: python-pandas-hdf5 Suggests: python-pandas-html Suggests: python-pandas-mysql Suggests: python-pandas-output_formatting Suggests: python-pandas-plot Suggests: python-pandas-postgresql Suggests: python-pandas-spss Suggests: python-pandas-sql-other Suggests: python-pandas-test Suggests: python-pandas-xml %{?with_aws:Suggests: python-pandas-aws} %{?with_gcp:Suggests: python-pandas-gcp} %{?with_pyarrow:Suggests: python-pandas-parquet} %{?with_pyarrow:Suggests: python-pandas-feather} # /SECTION %if %{with test} # required for sqlite3 tests BuildRequires: %{pythons} BuildRequires: %{python_module pandas-test = %{version}} BuildRequires: memory-constraints BuildRequires: xvfb-run %if !%{with ringdisabled} BuildRequires: %{python_module IPython} BuildRequires: %{python_module dask-array} BuildRequires: %{python_module dask-dataframe} BuildRequires: %{python_module pandas-all = %{version}} BuildRequires: %{python_module pandas-clipboard = %{version}} BuildRequires: %{python_module pandas-compression = %{version}} BuildRequires: %{python_module pandas-computation = %{version}} BuildRequires: %{python_module pandas-excel = %{version}} %{?with_pyarrow:BuildRequires: %{python_module pandas-feather = %{version}}} BuildRequires: %{python_module pandas-fss = %{version}} BuildRequires: %{python_module pandas-hdf5 = %{version}} BuildRequires: %{python_module pandas-html = %{version}} BuildRequires: %{python_module pandas-mysql = %{version}} BuildRequires: %{python_module pandas-output_formatting = %{version}} %{?with_pyarrow:BuildRequires: %{python_module pandas-parquet = %{version}}} BuildRequires: %{python_module pandas-performance = %{version}} BuildRequires: %{python_module pandas-plot = %{version}} BuildRequires: %{python_module pandas-postgresql = %{version}} %{?with_pyarrow:BuildRequires: %{python_module pandas-pyarrow = %{version}}} BuildRequires: %{python_module pandas-spss = %{version}} BuildRequires: %{python_module pandas-sql-other = %{version}} BuildRequires: %{python_module pandas-xml = %{version}} BuildRequires: xclip %{?with_aws:BuildRequires: %{python_module pandas-aws = %{version}}} %{?with_gcp:BuildRequires: %{python_module pandas-gcp = %{version}}} %{?with_consortium_standard:BuildRequires: %{python_module pandas-consortium-standard = %{version}}} %endif %endif %python_subpackages %description Pandas is a Python package providing data structures designed for working with structured (tabular, multidimensional, potentially heterogeneous) and time series data. It is a high-level building block for doing data analysis in Python. %package test Summary: The python pandas[test] extra Requires: python-hypothesis >= 6.46.1 Requires: python-pandas = %{version} Requires: python-pytest >= 7.3.2 Requires: python-pytest-xdist >= 2.2.0 BuildArch: noarch %description test This package provides the [test] extra for python-pandas %package pyarrow Summary: The python pandas[pyarrow] extra Requires: python-pandas = %{version} Requires: python-pyarrow >= 10.0.1 BuildArch: noarch %description pyarrow This package provides the [pyarrow] extra for python-pandas %package performance Summary: The python pandas[performance] extra Requires: python-Bottleneck >= 1.3.6 Requires: python-numba >= 0.56.4 Requires: python-numexpr >= 2.8.4 Requires: python-pandas = %{version} BuildArch: noarch %description performance This package provides the [performance] extra for python-pandas It is highly recommended to install this subpackage, as its dependencies provide speed improvements, especially when working with large data sets. %package computation Summary: The python pandas[computation] extra Requires: python-pandas = %{version} Requires: python-scipy >= 1.10.0 Requires: python-xarray >= 2022.12.0 BuildArch: noarch %description computation This package provides the [computation] extra for python-pandas %package fss Summary: The python pandas[fss] extra Requires: python-fsspec >= 2022.11 Requires: python-pandas = %{version} BuildArch: noarch %description fss This package provides the [fss] extra for python-pandas %package aws Summary: The python pandas[aws] extra Requires: python-pandas = %{version} Requires: python-s3fs >= 2022.11 BuildArch: noarch %description aws This package provides the [aws] extra for python-pandas %package gcp Summary: The python pandas[gcp] extra Requires: python-gcsfs >= 2022.11 Requires: python-pandas = %{version} Requires: python-pandas-gbq >= 0.19.0 BuildArch: noarch %description gcp This package provides the [gcp] extra for python-pandas %package excel Summary: The python pandas[excel] extra Requires: python-odfpy >= 1.4.1 Requires: python-openpyxl >= 3.1.0 Requires: python-pandas = %{version} %{?with_xlsb:Requires: python-pyxlsb >= 1.0.10} Requires: python-XlsxWriter >= 3.0.5 Requires: python-xlrd >= 2.0.1 %{?with_calamine:Requires: python-calamine >= 0.1.7} BuildArch: noarch %description excel This package provides the [excel] extra for python-pandas. (Except for pyxlsb and calamine which are not available as openSUSE rpm package) %package parquet Summary: The python pandas[parquet] extra Requires: python-pandas = %{version} Requires: python-pyarrow >= 10.0.1 BuildArch: noarch %description parquet This package provides the [parquet] extra for python-pandas %package feather Summary: The python pandas[feather] extra Requires: python-pandas = %{version} Requires: python-pyarrow >= 10.0.1 BuildArch: noarch %description feather This package provides the [feather] extra for python-pandas %package hdf5 Summary: The python pandas[hdf5] extra Requires: python-blosc Requires: python-pandas = %{version} Requires: python-tables >= 3.8.0 BuildArch: noarch %description hdf5 This package provides the [hdf5] extra for python-pandas %package spss Summary: The python pandas[spss] extra Requires: python-pandas = %{version} Requires: python-pyreadstat >= 1.2.0 BuildArch: noarch %description spss This package provides the [spss] extra for python-pandas %package postgresql Summary: The python pandas[postgresql] extra Requires: python-SQLAlchemy >= 2.0.0 Requires: python-pandas = %{version} Requires: python-psycopg2 >= 2.9.6 %{?with_adbc:Requires: python-adbc-driver-postgresql >= 0.8} BuildArch: noarch %description postgresql This package provides the [postgresql] extra for python-pandas %package mysql Summary: The python pandas[mysql] extra Requires: python-PyMySQL >= 1.0.2 Requires: python-SQLAlchemy >= 2.0.0 Requires: python-pandas = %{version} BuildArch: noarch %description mysql This package provides the [mysql] extra for python-pandas %package sql-other Summary: The python pandas[sql-other] extra Requires: python-SQLAlchemy >= 2.0.0 %{?with_adbc:Requires: python-adbc-driver-postgresql >= 0.8} %{?with_adbc:Requires: python-adbc-driver-sqlite >= 0.8} Requires: python-pandas = %{version} BuildArch: noarch %description sql-other This package provides the [sql-other] extra for python-pandas %package html Summary: The python pandas[html] extra Requires: python-beautifulsoup4 >= 4.11.2 Requires: python-html5lib >= 1.1 Requires: python-lxml >= 4.9.2 Requires: python-pandas = %{version} BuildArch: noarch %description html This package provides the [html] extra for python-pandas %package xml Summary: The python pandas[xml] extra Requires: python-lxml >= 4.9.2 Requires: python-pandas = %{version} BuildArch: noarch %description xml This package provides the [xml] extra for python-pandas %package plot Summary: The python pandas[plot] extra Requires: python-matplotlib >= 3.6.3 Requires: python-pandas = %{version} BuildArch: noarch %description plot This package provides the [plot] extra for python-pandas %package output_formatting Summary: The python pandas[output_formatting] extra Requires: python-Jinja2 >= 3.1.2 Requires: python-pandas = %{version} Requires: python-tabulate >= 0.9.0 BuildArch: noarch %description output_formatting This package provides the [output_formatting] extra for python-pandas %package clipboard Summary: The python pandas[clipboard] extra Requires: python-PyQt5 >= 5.15.9 Requires: python-QtPy >= 2.3.0 Requires: python-pandas = %{version} BuildArch: noarch %description clipboard This package provides the [clipboard] extra for python-pandas %package compression Summary: The python pandas[compression] extra Requires: python-pandas = %{version} Requires: python-zstandard >= 0.19.0 BuildArch: noarch %description compression This package provides the [compression] extra for python-pandas %package consortium-standard Summary: The python pandas[consortium-standard] extra Requires: python-dataframe-api-compat >= 0.1.7 Requires: python-pandas = %{version} BuildArch: noarch %description consortium-standard This package provides the [consortium-standard] extra for python-pandas %package all Summary: The python pandas[all] extra Requires: python-Bottleneck >= 1.3.6 Requires: python-Jinja2 >= 3.1.2 Requires: python-PyMySQL >= 1.0.2 Requires: python-PyQt5 >= 5.15.9 Requires: python-QtPy >= 2.3.0 Requires: python-SQLAlchemy >= 2 Requires: python-XlsxWriter >= 3.0.5 Requires: python-beautifulsoup4 >= 4.11.2 %{?with_adbc:Requires: python-adbc-driver-postgresql >= 0.8} %{?with_adbc:Requires: python-adbc-driver-sqlite >= 0.8} Requires: python-blosc %{?with_calamine:Requires: python-calamine >= 0.1.7} %{?with_pyarrow:Requires: python-fastparquet >= 2022.12} Requires: python-fsspec >= 2022.11 Requires: python-gcsfs >= 2022.11 Requires: python-html5lib >= 1.1 Requires: python-hypothesis >= 6.46.1 Requires: python-lxml >= 4.9.2 Requires: python-matplotlib >= 3.6.3 Requires: python-numba >= 0.56.4 Requires: python-numexpr >= 2.8.4 Requires: python-odfpy >= 1.4.1 Requires: python-openpyxl >= 3.1.0 Requires: python-pandas = %{version} Requires: python-psycopg2 >= 2.9.6 %{?with_pyarrow:Requires: python-pyarrow >= 10.0.1} Requires: python-pyreadstat >= 1.2.0 Requires: python-pytest >= 7.3.2 Requires: python-pytest-xdist >= 2.2.0 Requires: python-scipy >= 1.10.0 Requires: python-tables >= 3.8.0 Requires: python-tabulate >= 0.9 Requires: python-xarray >= 2022.12 Requires: python-xlrd >= 2.0.1 Requires: python-zstandard >= 0.19.0 %{?with_aws:Requires: python-s3fs >= 2022.05.0} %{?with_gcp:Requires: python-pandas-gbq >= 0.19} %{?with_xslb:Requires: python-pyxlsb >= 1.0.10} %{?with_consortium_standard: Requires: python-dataframe-api-compat >= 0.1.7} BuildArch: noarch %description all This package provides most the [all] extra for python-pandas Some requirements defined in the PyPI package are left out because they are not available as openSUSE RPM packages: * pandas-gbq * pyxlsb * s3fs * dataframe-api-compat * adbc-driver-postgresql * adbc-driver-sqlite * calamine You can install them directly through `pip%{python_bin_suffix} install --user`, if needed. %prep # ATTENTION: unpack and generate _version_meson.py before any patches and modifications for a clean version %setup -q -n pandas-%{version} %if !%{with test} # use the last one from the buildset: need versioneer installed %python_expand genpython="%__$python" ${genpython} generate_version.py -o _version_meson.py sed -i "s|'generate_version.py',|'${genpython}', 'generate_version.py',|" meson.build # don't require the PyPI data only tzdata package, we use the timezone RPM package sed -i '/dependencies = \[/,/\]/ {/tzdata.*>=/d}' pyproject.toml %endif %autopatch -p1 %build %if !%{with test} %{?gccver:export CXX=g++-%{gccver}} %{?gccver:export CC=gcc-%{gccver}} export CFLAGS="%{optflags} -fno-strict-aliasing" %pyproject_wheel %endif %install %if !%{with test} %pyproject_install %{python_expand # find %{buildroot}%{$python_sitearch}/pandas/_libs -name '*.[ch]' -delete sed -i -e '/.[ch],/d' %{buildroot}%{$python_sitearch}/pandas-%{version}.dist-info/RECORD %fdupes %{buildroot}%{$python_sitearch} } %else # Copy the installed package back into the source tree # This is equivalent to build and install editable (pip install -e .), and the only way # to have a passing test suite due to how the test collection works in pytest >= 7. # Only works for separate python flavors in multibuild. %python_expand cp -rf %{$python_sitearch}/pandas/* pandas/ %endif %check %if %{with test} export LANG=en_US.UTF-8 export LC_ALL=en_US.UTF-8 export PYTHONDONTWRITEBYTECODE=1 # Workaround for pytest-xdist flaky collection order # https://github.com/pytest-dev/pytest/issues/920 # https://github.com/pytest-dev/pytest/issues/1075 export PYTHONHASHSEED=1 # no network connection on obs SKIP_MARKERS="network" # clipboard not set up properly in build service without window manager SKIP_MARKERS+=" or clipboard" # skip tests which upstream marked for -n 1 only. SKIP_MARKERS+=" or single_cpu" # pytest-xdist worker crash SKIP_TESTS="test_pivot_number_of_levels_larger_than_int32" # no locally running database server SKIP_TESTS+=" or psycopg2_engine or psycopg2_conn or pymysql_engine or pymysql_conn" SKIP_TESTS+=" or test_psycopg2_schema_support" SKIP_TESTS+=" or test_self_join_date_columns" # expects a dirty git revision from git repo SKIP_TESTS+=" or test_git_version" %if "%{flavor}" == "test-py312" # https://github.com/pandas-dev/pandas/pull/57391, proposed change is not necessarily the right one SKIP_TESTS+=" or (test_scalar_unary and numexpr-pandas)" %endif # Numpy2: unexpected 'np.str_(...)' in error message SKIP_TESTS+=" or test_group_subplot_invalid_column_name" # https://github.com/pandas-dev/pandas/pull/55901, not gonna merge this huge patch to fix one test failing with new timezone, will be included in new release SKIP_TESTS+=" or test_array_inference[data7-expected7]" # numpy 2.1 issues? SKIP_TESTS+=" or test_frame_setitem_dask_array_into_new_col" SKIP_TESTS+=" or test_from_obscure_array" %ifarch %{ix86} %{arm32} # https://github.com/pandas-dev/pandas/issues/31856 SKIP_TESTS+=" or test_maybe_promote_int_with_int" # rounding error SKIP_TESTS+=" or (test_rolling_quantile_interpolation_options and data1 and linear and 0.1)" # overflow SKIP_TESTS+=" or test_large_string_pyarrow" SKIP_TESTS+=" or test_pandas_nullable_with_missing_values" SKIP_TESTS+=" or test_pandas_nullable_without_missing_values" SKIP_TESTS+=" or (test_to_datetime and TestOrigin and test_epoch)" SKIP_TESTS+=" or test_td_mul_numeric_ndarray_0d" SKIP_TESTS+=" or test_get_indexer_non_unique_wrong_dtype" # pyarrow read-only errors SKIP_TESTS+=" or test_left_join_multi_index" SKIP_TESTS+=" or test_join_on_single_col_dup_on_right" # dtype mismatch SKIP_TESTS+=" or test_frame_setitem_dask_array_into_new_col" SKIP_TESTS+=" or test_get_indexer_arrow_dictionary_target" # numba formats not supported on 32-bit SKIP_TESTS+=" or numba" %endif %ifarch %{ix86} # overflows on i586 SKIP_TESTS+=" or test_encode_non_c_locale" # intp != int32 (still numpy 1)? SKIP_TESTS+=" or test_ensure_platform_int" # fails on i586 (was gcc10-skip-one-test.patch) SKIP_TESTS+=" or test_merge_on_ints_floats_warning" %endif %ifarch ppc64 s390x # big endian type issues SKIP_TESTS+=" or test_astype" SKIP_TESTS+=" or test_to_numpy_string" SKIP_TESTS+=" or (test_construction and test_to_numpy)" SKIP_TESTS+=" or test_to_records_index_name" SKIP_TESTS+=" or test_to_records_dtype" SKIP_TESTS+=" or test_to_records_dict_like" SKIP_TESTS+=" or (test_c_parser_only and test_unsupported_dtype)" SKIP_TESTS+=" or test_td_mul_td64_ndarray_invalid" %endif %ifnarch x86_64 # type and numeric precision issues, partially reported for arm and marked xfail upstream but not for e.g. ppc SKIP_TESTS+=" or (test_astype and test_subtype_integer_errors)" SKIP_TESTS+=" or (test_to_numeric and test_downcast_nullable_numeric and data12-UInt64-signed-UInt64)" SKIP_TESTS+=" or (test_rolling and test_rolling_var_numerical_issues)" SKIP_TESTS+=" or (test_groupby and test_groupby_numerical_stability_sum_mean)" SKIP_TESTS+=" or (test_groupby and test_groupby_numerical_stability_cumsum)" SKIP_TESTS+=" or (test_c_parser_only and test_float_precision_options)" # run the slow tests only on x86_64 SKIP_MARKERS+=" or slow or db" %endif # The test collection consumes a lot of memory per worker. This sets %%jobs. %limit_build -m 3072 %{python_expand $python -c 'import pandas; print(pandas.__path__); print(pandas.show_versions())' # cache: can't just say no cacheprovider, because one test checks for the --lf option of pytest-cache xvfb-run pytest-%{$python_bin_suffix} -v -n %{jobs} -rsfE --dist=loadfile \ -o cache_dir=$PWD/.pytest_cache --cache-clear \ -m "not (${SKIP_MARKERS})" \ -k "not (${SKIP_TESTS})" \ pandas } %endif %if !%{with test} %files %{python_files} %license LICENSE %doc README.md %{python_sitearch}/pandas/ %{python_sitearch}/pandas-%{version}.dist-info %files %{python_files test} %license LICENSE %doc README.md %if !%{with ringdisabled} %files %{python_files pyarrow} %license LICENSE %doc README.md %files %{python_files performance} %license LICENSE %doc README.md %if 0%{python_version_nodots} >= 310 %files %{python_files computation} %license LICENSE %doc README.md %endif %files %{python_files fss} %license LICENSE %doc README.md %if %{with aws} %files %{python_files aws} %license LICENSE %doc README.md %endif %if %{with gcp} %files %{python_files gcp} %license LICENSE %doc README.md %endif %files %{python_files excel} %license LICENSE %doc README.md %if %{with pyarrow} %files %{python_files parquet} %license LICENSE %doc README.md %endif %if %{with pyarrow} %files %{python_files feather} %license LICENSE %doc README.md %endif %files %{python_files hdf5} %license LICENSE %doc README.md %files %{python_files spss} %license LICENSE %doc README.md %files %{python_files postgresql} %license LICENSE %doc README.md %files %{python_files mysql} %license LICENSE %doc README.md %files %{python_files sql-other} %license LICENSE %doc README.md %files %{python_files html} %license LICENSE %doc README.md %files %{python_files xml} %license LICENSE %doc README.md %files %{python_files plot} %license LICENSE %doc README.md %files %{python_files output_formatting} %license LICENSE %doc README.md %files %{python_files clipboard} %license LICENSE %doc README.md %files %{python_files compression} %license LICENSE %doc README.md %if %{with consortium_standard} %files %{python_files consortium-standard} %license LICENSE %doc README.md %endif %files %{python_files all} %license LICENSE %doc README.md %endif %endif %changelog
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