Revisions of python-nibabel
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request 1189472
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Steve Kowalik (StevenK)
(revision 27)
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Steve Kowalik (StevenK)
committed
(revision 26)
- Remove numpy upper bound. - Add patch support-numpy-2.patch: * Use np.asarray() to support NumPy 2 as well.
buildservice-autocommit
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request 1188927
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Steve Kowalik (StevenK)
(revision 25)
baserev update by copy to link target
Steve Kowalik (StevenK)
committed
(revision 24)
- Switch to autosetup macro. - Restrict numpy to < 2 because it isn't currently supported. - Add patch support-pytest-8.patch: * Use pytest setup/teardown methods.
buildservice-autocommit
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request 1161551
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Dirk Mueller (dirkmueller)
(revision 23)
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Dirk Mueller (dirkmueller)
committed
(revision 22)
- update to 5.2.1: * Support "flat" ASCII-encoded GIFTI DataArrays (pr/1298) (PM, reviewed by CM) * Tolerate missing ``git`` when reporting version info (pr/1286) * Handle Siemens XA30 derived DWI DICOMs (pr/1296) * Add tool for generating GitHub-friendly release notes * Accommodate pytest 8 changes (pr/1297) (CM) * nib-convert CLI tool to make image type and data dtype conversion * Allow dtypes to be passed to Analyze-like images at __init__() * Passing (u)int64 arrays to Nifti1Image and subclasses will warn unless a header or dtype option is passed; in the future this will become an error. Additionally, passing int or 'int' to set_data_dtype() now raises an error, requiring an explicit numpy dtype to make 64-bit - skip python 36
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request 1147160
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Matej Cepl (mcepl)
(revision 21)
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Matej Cepl (mcepl)
accepted
request 1147056
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Benjamin Greiner (bnavigator)
(revision 20)
- Update to 5.2.0 ## New features * Add generic Pointset and regularly spaced Grid data structures in preparation for coordinate transformation and resampling (#1251) (CM, reviewed by Oscar Esteban) ## Enhancements * Add copy method to ArrayProxy (#1255) (CM, reviewed by Paul McCarthy) * Permit to_xml to pass keyword arguments to tostring (#1258) (CM) * Allow user expansion (e.g., ~/...) in strings passed to functions that accept paths (#1260) (Reinder Vos de Wael, reviewed by CM) * Expand CIFTI-2 brain structures to permit synonyms (#1256) (CM, reviewed by Mathias Goncalves) * Annotate SpatialImage as accepting affine=None argument (#1253) (Blake Dewey, reviewed by CM) * Warn on invalid MINC2 spacing declarations, treat as missing (#1237) (Peter Suter, reviewed by CM) * Refactor find_private_section for improved readability and maintainability (#1228) (MB, reviewed by CM) ## API changes and deprecations * The nibabel.pydicom_compat module is deprecated and will be removed in NiBabel 7.0. (#1280) * The int_to_float and as_int functions are no longer needed to work around NumPy deficiencies and have been deprecated (#1272) (CM, reviewed by EL) - Release 5.1 ## Enhancements * Make imagestats available with import nibabel (pr/1208) (Fabian Perez, reviewed by CM) * Use symmetric threshold for identifying unit quaternions on qform calculations (pr/1182) (CM, reviewed by MB) * Type annotations for nibabel.loadsave (pr/1213) and nibabel.spatialimages.SpatialImage APIs (pr/1179), nibabel.deprecated, nibabel.deprecator, nibabel.onetime and nibabel.optpkg modules (pr/1188), nibabel.volumeutils (pr/1189), nibabel.filename_parser and nibabel.openers (pr/1197) (CM, reviewed by Zvi Baratz) - Release 5.0 ## New features * SerializableImage now has to_stream() and from_stream() methods to read/write streams implementing the io.IOBase interface. A from_url() method enables loading images from URLs. (pr/1129) (CM, reviewed by MB) * TrkFile supports TRKv3, an undocumented but generally compatible variant of TRKv2. (pr/1125) (CM) ## Enhancements * Support multiline header fields in TCKFile (pr/1175) (CM, reviewed by Matt Cieslak) * Make layout order an initialization parameter of ArrayProxy (pr/1131) (CM, reviewed by MB) * Initial support for type annotations. (pr/1115, pr/1178) (CM, reviewed by Zvi Baratz) ## API changes and deprecations * Passing an int64 array to Nifti1Image without a header or dtype argument will raise a ValueError. (pr/1173) (CM) * tmpdirs.TemporaryDirectory is deprecated in favor of tempfile.TemporaryDirectory. (pr/1172) (CM, reviewed by Zvi Baratz) * The nisext package is deprecated and will be removed in NiBabel 6.0. (pr/1170) (CM, reviewed by MB) * Drop support for Python 3.7, Numpy < 1.19 (pr/1177) (CM) * The following deprecated functions and methods will now raise ExpiredDeprecationErrors - nibabel.loadsave.read_img_data - nibabel.dataobj_images.DataobjImage.get_data - nibabel.loadsave.guessed_image_type - nibabel.onetime.setattr_on_read - nibabel.orientations.flip_axis * Modules, classes and functions that expired at 4.0 were fully removed. ExpiredDeprecationError will now be AttributeError.
buildservice-autocommit
accepted
request 1009448
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Markéta Machová (mcalabkova)
(revision 19)
baserev update by copy to link target
Markéta Machová (mcalabkova)
committed
(revision 18)
add the new binaries also to %files
Markéta Machová (mcalabkova)
accepted
request 1008422
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Markéta Machová (mcalabkova)
(revision 17)
- Update to 4.0.2 * many changes, see Changelog * nib-convert CLI tool to make image type and data dtype conversion accessible via the command line. * Allow dtypes to be passed to Analyze-like images at __init__() and to_filename() * Allow compressed GIFTI images * Add zstd compression support * Test on Python 3.10 * Passing (u)int64 arrays to Nifti1Image and subclasses will warn unless a header or dtype option is passed; in the future this will become an error. Additionally, passing int or 'int' to set_data_dtype() now raises an error, requiring an explicit numpy dtype to make 64-bit integer images. * Drop support for Python 3.6, Numpy < 1.17 * Fully removed the APIs, which have raised errors on use since 3.0 - Drop upstreamed 983.patch and purge-nose.patch
buildservice-autocommit
accepted
request 882372
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Markéta Machová (mcalabkova)
(revision 16)
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Markéta Machová (mcalabkova)
accepted
request 882320
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Guillaume GARDET (Guillaume_G)
(revision 15)
- Add upstream patch to fix test on Backports:SLE-15-SP3: * 983.patch
buildservice-autocommit
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request 871459
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Dirk Mueller (dirkmueller)
(revision 14)
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Dirk Mueller (dirkmueller)
committed
(revision 13)
- skip python 36
buildservice-autocommit
accepted
request 819969
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Tomáš Chvátal (scarabeus_iv)
(revision 12)
baserev update by copy to link target
Tomáš Chvátal (scarabeus_iv)
accepted
request 819962
from
Markéta Machová (mcalabkova)
(revision 11)
- Update to 3.1.1 * Conformation function (``processing.conform``) and CLI tool (``nib-conform``) to apply shape, orientation and zooms (pr/853) (Jakub Kaczmarzyk, reviewed by CM, YOH) * Affine rescaling function (``affines.rescale_affine``) to update dimensions and voxel sizes (pr/853) (CM, reviewed by Jakub Kaczmarzyk) * ``kw_only_meth``/``kw_only_func`` decorators are deprecated (pr/848) (RM, reviewed by CM) - Add patch purge-nose.patch
buildservice-autocommit
accepted
request 808042
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Tomáš Chvátal (scarabeus_iv)
(revision 10)
baserev update by copy to link target
buildservice-autocommit
accepted
request 782024
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Tomáš Chvátal (scarabeus_iv)
(revision 8)
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