python-biopython
The Biopython Project is an international association of developers of freely available Python tools for computational molecular biology.
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| Filename | Size | Changed |
|---|---|---|
| _link | 0000000124 124 Bytes | |
| biopython-1.78.tar.gz | 0016895184 16.1 MB | |
| python-biopython-rpmlintrc | 0000000102 102 Bytes | |
| python-biopython.changes | 0000023809 23.3 KB | |
| python-biopython.spec | 0000002610 2.55 KB |
Revision 13 (latest revision is 28)
Matej Cepl (mcepl)
accepted
request 874100
from
andy great (andythe_great)
(revision 13)
- Update to version 1.7.8.
* The main change is that Bio.Alphabet is no longer used. In some
cases you will now have to specify expected letters, molecule
type (DNA, RNA, protein), or gap character explicitly.
* Bio.SeqIO.parse() is faster with "fastq" format due to small
improvements in the Bio.SeqIO.QualityIO module.
* The SeqFeature object's .extract() method can now be used for
trans-spliced locations via an optional dictionary of references.
* As in recent releases, more of our code is now explicitly
available under either our original "Biopython License Agreement",
or the very similar but more commonly used "3-Clause BSD License".
See the LICENSE.rst file for more details.
* Additionally, a number of small bugs and typos have been fixed
with additions to the test suite. There has been further work to
follow the Python PEP8, PEP257 and best practice standard coding
style, and all of the tests have been reformatted with the black
tool to match the main code base.
- Skip python36 because numpy no longer support it.
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