python-biopython

Edit Package python-biopython

The Biopython Project is an international association of developers of freely available Python tools for computational molecular biology.

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Source Files
Filename Size Changed
biopython-1.84.tar.gz 0025793001 24.6 MB
python-biopython-rpmlintrc 0000000102 102 Bytes
python-biopython.changes 0000031671 30.9 KB
python-biopython.spec 0000002607 2.55 KB
Latest Revision
Ana Guerrero's avatar Ana Guerrero (anag+factory) accepted request 1206739 from Dirk Mueller's avatar Dirk Mueller (dirkmueller) (revision 13)
- update to 1.84:
  * The old parser stores information in a
    Bio.Blast.NCBIXML.Blast object, with attribute names based on
    plain-text Blast output. The new parser stores information in
    a Bio.Blast.Record object. This class follows the DTD that
    describes the XML in terms of attribute names and dictionary
    key names, class structure, and object types. This makes it
    easier to find the detailed description of each field in the
    NCBI Blast documentation.
  * The old parser stores alignment information directly as seen
    in the BLAST XML output, i.e. as strings with dashes to
    represent gaps. The new parser stores the alignment
    information as a Bio.Align.Alignment object, which can then
    be used to e.g. print the alignment in a different format.
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