python-biopython
The Biopython Project is an international association of developers of freely available Python tools for computational molecular biology.
- Developed at devel:languages:python:numeric
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Source Files
Filename | Size | Changed |
---|---|---|
biopython-1.84.tar.gz | 0025793001 24.6 MB | |
python-biopython-rpmlintrc | 0000000102 102 Bytes | |
python-biopython.changes | 0000031671 30.9 KB | |
python-biopython.spec | 0000002607 2.55 KB |
Latest Revision
Ana Guerrero (anag+factory)
accepted
request 1206739
from
Dirk Mueller (dirkmueller)
(revision 13)
- update to 1.84: * The old parser stores information in a Bio.Blast.NCBIXML.Blast object, with attribute names based on plain-text Blast output. The new parser stores information in a Bio.Blast.Record object. This class follows the DTD that describes the XML in terms of attribute names and dictionary key names, class structure, and object types. This makes it easier to find the detailed description of each field in the NCBI Blast documentation. * The old parser stores alignment information directly as seen in the BLAST XML output, i.e. as strings with dashes to represent gaps. The new parser stores the alignment information as a Bio.Align.Alignment object, which can then be used to e.g. print the alignment in a different format.
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