C library for high-throughput sequencing data formats
HTSlib is an implementation of a unified C library for accessing common file formats, such as SAM, CRAM and VCF, used for high-throughput sequencing data, and is the core library used by samtools and bcftools.
HTSlib implements a generalized BAM index, with file extension .csi (coordinate-sorted index). The HTSlib file reader first looks for the new index and then for the old if the new index is absent.
This project also includes the popular tabix indexer, which indexes both .tbi and .csi formats, and the bgzip compression utility.
- Sources inherited from project openSUSE:Backports:SLE-15-SP4
- Download package
-
Checkout Package
osc -A https://api.opensuse.org checkout openSUSE:Leap:15.4:Update/libhts && cd $_ - Create Badge
Refresh
Refresh
Source Files
| Filename | Size | Changed |
|---|---|---|
| baselibs.conf | 0000000098 98 Bytes | |
| htslib-1.12.tar.bz2 | 0004094458 3.9 MB | |
| libhts.changes | 0000019685 19.2 KB | |
| libhts.spec | 0000005934 5.79 KB |
Latest Revision
Yuchen Lin (maxlin_factory)
accepted
request 939332
from
Yuchen Lin (maxlin_factory)
(revision 3)
Automatically create request by update submitter. This is trying to update package to openSUSE:Backports:SLE-15-SP4 from openSUSE:Factory. Please review this change and decline it if Leap do not need it.
Comments 0