python-biopython

Edit Package python-biopython

The Biopython Project is an international association of developers of freely available Python tools for computational molecular biology.

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Filename Size Changed
biopython-1.84.tar.gz 0025793001 24.6 MB
py313-support.patch 0000001018 1018 Bytes
python-biopython-rpmlintrc 0000000102 102 Bytes
python-biopython.changes 0000031861 31.1 KB
python-biopython.spec 0000002657 2.59 KB
Revision 25 (latest revision is 28)
Dirk Mueller's avatar Dirk Mueller (dirkmueller) committed (revision 25)
- update to 1.84:
  * The old parser stores information in a
    Bio.Blast.NCBIXML.Blast object, with attribute names based on
    plain-text Blast output. The new parser stores information in
    a Bio.Blast.Record object. This class follows the DTD that
    describes the XML in terms of attribute names and dictionary
    key names, class structure, and object types. This makes it
    easier to find the detailed description of each field in the
    NCBI Blast documentation.
  * The old parser stores alignment information directly as seen
    in the BLAST XML output, i.e. as strings with dashes to
    represent gaps. The new parser stores the alignment
    information as a Bio.Align.Alignment object, which can then
    be used to e.g. print the alignment in a different format.
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